PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G129000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family RAV
Protein Properties Length: 375aa    MW: 43206.8 Da    PI: 9.3573
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G129000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.91.3e-0955101254
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          ++kGV     +g W A+I+       ++r++lg+f +++eAa a++ a+ k++
  Manes.08G129000.1.p  55 KFKGVV-PQHNGHWGAQIYAK-----HQRIWLGTFKSEKEAAMAYDSAAIKIR 101
                          789996.455899*******3.....5**********99**********9997 PP
2B390.41.4e-28187285184
                          EEEE-..-HHHHTT-EE--HHH.HTT..........---.........--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkke.......esktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                          f+k+ltpsdv+k++rlv+pkkfa ++          +  ke       e+++l+++d+  +sW+++++y+++s+++v+t+GW++Fvk+++
  Manes.08G129000.1.p 187 FQKELTPSDVGKLNRLVIPKKFAVKYfpyisgnmenD--KEhglghglEDVELVFYDRLMKSWKFRYCYWRSSQSFVFTRGWNRFVKEKN 274
                          99****************************9888541..335677777999*************************************** PP

                          --TT-EEEEEE CS
                   B3  74 LkegDfvvFkl 84 
                          Lke+D+v+F+ 
  Manes.08G129000.1.p 275 LKEKDIVTFYA 285
                          *********94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.17E-2254112No hitNo description
SuperFamilySSF541718.5E-1455111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-1555110IPR001471AP2/ERF domain
PROSITE profilePS5103216.37155110IPR001471AP2/ERF domain
SMARTSM003803.9E-1955116IPR001471AP2/ERF domain
PfamPF008473.2E-555101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.8E-32185287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-27186285IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-26186284No hitNo description
PfamPF023626.6E-26187285IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773187307IPR003340B3 DNA binding domain
SMARTSM010197.1E-20187296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDLLEDASSS MLCNAKMNPT TAETSDSFNS HYYCRIRPAK RPRLELNNSN IFAAKFKGVV  60
PQHNGHWGAQ IYAKHQRIWL GTFKSEKEAA MAYDSAAIKI RSGDSHRNLP WTERNIQEPD  120
FQSQYTTEAV LNMIRDGSYQ PKFADFLRKQ TRRQEAAAET SLSLNNNTNQ TRVHGGDHGK  180
FSFIQLFQKE LTPSDVGKLN RLVIPKKFAV KYFPYISGNM ENDKEHGLGH GLEDVELVFY  240
DRLMKSWKFR YCYWRSSQSF VFTRGWNRFV KEKNLKEKDI VTFYACVSSQ RIQEGQQFCL  300
IDISYGNGQS CSTVVDAPCQ IEEMQKELEL NLGQSIRNKL QEDHHGKEKR FRSGLEFMNS  360
NKGKGLRLFG VQID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2718628313100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G129000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621544.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-108RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2C9VHU40.0A0A2C9VHU4_MANES; Uncharacterized protein
STRINGcassava4.1_023592m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-108RAV family protein