PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.08G123100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 340aa MW: 38307.2 Da PI: 6.2918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G123100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.5e-13	137	188	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Manes.08G123100.1.p 137 QRMTHIAVERNRRKQMNEYLSILRSLMPES---YVQRGDQASIIGGAINFVKELE 188 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-13	135	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.87E-13	135	192	No hit	No description
SuperFamily	SSF47459	1.7E-16	135	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.351	136	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-10	137	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-10	142	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MALEAVVYQQ DLFGHSSKEI YNLLGGNWSY DHSLLEKEDD KACSFDNFLE NQPESFLHGD 60 WNSSPPPSVF PHFTEMLQIN PSPDANNVNN GLTTCTPAAT ELFPDHNLLA HSSSTMPARA 120 KRRRSRSRKN KEEIENQRMT HIAVERNRRK QMNEYLSILR SLMPESYVQR GDQASIIGGA 180 INFVKELEQR LQSLAAQKET KEKSDGVEAS SLPFSEFFTF PQYSTSSTRC ENSVAAVNET 240 MSTTQSTSVV DIEVTMVESH ANLKIRSKRR PKQLLKVVSG LHAMRLTILH LNVTTIHQIV 300 LYSLSVKIED DCKLSSVDEI ATAVYEMLGR IQEECSMMN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	148	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G123100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620025.1	0.0	transcription factor bHLH94-like
TrEMBL	A0A2C9VFQ3	0.0	A0A2C9VFQ3_MANES; Uncharacterized protein
STRING	cassava4.1_033287m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF718	34	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.08G123100.1.p