PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G123100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 38307.2 Da PI: 6.2918 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.5e-13 | 137 | 188 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Manes.08G123100.1.p 137 QRMTHIAVERNRRKQMNEYLSILRSLMPES---YVQRGDQASIIGGAINFVKELE 188 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-13 | 135 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.87E-13 | 135 | 192 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-16 | 135 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.351 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 137 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-10 | 142 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MALEAVVYQQ DLFGHSSKEI YNLLGGNWSY DHSLLEKEDD KACSFDNFLE NQPESFLHGD 60 WNSSPPPSVF PHFTEMLQIN PSPDANNVNN GLTTCTPAAT ELFPDHNLLA HSSSTMPARA 120 KRRRSRSRKN KEEIENQRMT HIAVERNRRK QMNEYLSILR SLMPESYVQR GDQASIIGGA 180 INFVKELEQR LQSLAAQKET KEKSDGVEAS SLPFSEFFTF PQYSTSSTRC ENSVAAVNET 240 MSTTQSTSVV DIEVTMVESH ANLKIRSKRR PKQLLKVVSG LHAMRLTILH LNVTTIHQIV 300 LYSLSVKIED DCKLSSVDEI ATAVYEMLGR IQEECSMMN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 148 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G123100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620025.1 | 0.0 | transcription factor bHLH94-like | ||||
TrEMBL | A0A2C9VFQ3 | 0.0 | A0A2C9VFQ3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033287m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-77 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G123100.1.p |