PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.08G113300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GATA

Protein Properties

Length: 107aa MW: 12170.4 Da PI: 11.6404

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G113300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	29.9	7.7e-10	1	25	11	35
GATA 11 lWRrgpdgnktLCnaCGlyyrkkgl 35 +WR gp g+k+L naCG++yrkk++ Manes.08G113300.1.p 1 MWRGGPAGPKSLYNACGIRYRKKRK 25 7*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	1.3E-5	1	25	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	8.6E-8	1	25	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MWRGGPAGPK SLYNACGIRY RKKRKTVLGL EEDSEKKRRK GHISTIRSSM SASSVNSMNG 60 NELGESLKMR VIVMGEKMMC VRSSIVKKQR CHRRKSLERK NRLLFV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	39	KRKTVLGLEEDSEKKRRK
2	35	39	KKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G113300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021673019.1	8e-32	GATA transcription factor 15-like
TrEMBL	A0A2C9VHD0	1e-69	A0A2C9VHD0_MANES; Uncharacterized protein
STRING	cassava4.1_033081m	2e-70	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1569	32	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	1e-15	GATA transcription factor 15

Link Out ? help Back to Top
Phytozome	Manes.08G113300.1.p