PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G107100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 734aa    MW: 78203.1 Da    PI: 6.331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G107100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.3e-16465511455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Manes.08G107100.2.p 465 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 511
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.60E-17457515No hitNo description
SuperFamilySSF474591.57E-20458522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-20458519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MPLSELVYRL AKGKLDSSQE KNPTCSTDLS SGPENDFVEL VWENGQIQSN RTRKIQFSSG  60
FPSQTSRIQD KDIDNGSNTK VGRFGVMDSV IGEVPMSVPS VVMGLNQDDD MVPWFNYRIE  120
DTLEHDPELF NELSGVTANE QPHNHYTSME KRSCGNQSVR DSRSAPGHNG LSSEQGHITK  180
VSSVGDVDAN RPRNGSSQLY PSPSQQCQTS FPCFRSRGSA NSGESTNNLS RHATSRDSMR  240
VPPSGGGLPS IKVQNQVPVS STTNSSLMNF SHFSRPAAFV KANLHNNGTR AGSGISSIER  300
KVRKDKGSIA NSSNPGECIL IDTFSGSGKE TSFNYNPVLV SSNVDAKQLD PKSGEESLPS  360
KQPEALDRVD SKNDKHHCLI AESATRGFVD GEKTAEPLVV SSSVCSGNSV ERVSDEPTQN  420
LKRKHQETEE SEVPSEDVEE ESVAAKKTTP SRGGGGSKRS RAAEVHNLSE RRRRDRINEK  480
MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGLYMPSMML PPGMPHMQAA  540
HMAQFSPVGI GMGMGMGMGF GMGMPDMIGG SSGCSMIPVP PMHGACFRGP SISGPSALHG  600
MGASNLPIFA LSAQGHPMSY PCAPLLPISG GPLLKTSIGL NVGGVAGPLD NLDSAPGCFS  660
KDSIQNISSQ AIKNCGANSS MNQTSGQCQM TNENFEQPSL LQHSGQSSEV ADRGALNSAN  720
GNDNAPSGAT GCD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469474ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G107100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620740.10.0transcription factor PIF3-like isoform X2
TrEMBLA0A2C9VF610.0A0A2C9VF61_MANES; Uncharacterized protein
STRINGcassava4.1_002428m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-64phytochrome interacting factor 3