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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G099800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29891.5 Da PI: 4.4258 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6.1e-19 | 33 | 81 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Manes.08G099800.1.p 33 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 81 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.9E-33 | 32 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.587 | 32 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-28 | 32 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-28 | 33 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 33 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-21 | 33 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.2E-12 | 35 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDFTNSSSPS PSPSKTKRKQ QNEQQEPHQE VRFLGVRRRP WGRYAAEIRD PSTKERHWLG 60 TFDTAEEAAL AYDRAARSMR GFKARTNFVY SDMPAGSSVT SIISPDETQH EISALFAPAR 120 QYNQNSNTNQ NQQVLFTQDC TFNASFLYAN SCGLVTGGDG WVQGAEAGGS FQPVSATMDA 180 SGSNNCSGDS IELPPLPPDM TSSCYYGSEV SDGFWKETNF FGFSEEVSNA ASGPYLGFDS 240 NEFVQQGPFP GRAPSVSDTV TEGLDLGSSS AFFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-18 | 33 | 88 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-18 | 32 | 88 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00163 | DAP | Transfer from AT1G28160 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G099800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621814.1 | 0.0 | ethylene-responsive transcription factor ERF087 | ||||
TrEMBL | A0A2C9VG97 | 0.0 | A0A2C9VG97_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025049m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 7e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G099800.1.p |