PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G047400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 376aa    MW: 41392.2 Da    PI: 5.6619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G047400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-08219266455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Manes.08G047400.1.p 219 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 266
                          8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.18E-9213270No hitNo description
SuperFamilySSF474595.5E-15213283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14215280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6219266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-8221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MESPTGPVAR SSFTGPQPDE TGLDSLQFGE DIQHLISVPP ENASSFTALL ELPPNQAVEL  60
LHSPDSTIRT RNVIQTHHQK QYLQPQFNAA NLTFPTNSGL IERAARFSVF AGDNLHNITY  120
NSPETSSVPS NSSANLEKVV KSEPTEAESF LNPLQPLVSD PTTVENGAQN QRPVKRKERE  180
KKGKGSAKKN RSCANENSED AEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE  240
LVPGCNKISG TALVLDEIIN HVQSLQRQVE VLSMRLAAVN PGIDFNLDSI LAAESGSLMD  300
GNFPSMVMPM MWAEVQDSGN RQNSQQLWQF DALNQPVWGR EDGGYNFITP DNSLLSYDSS  360
ANSASMRSNQ LKMEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G047400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621235.10.0transcription factor bHLH48-like
SwissprotQ3EAI11e-101BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A2C9VDG60.0A0A2C9VDG6_MANES; Uncharacterized protein
STRINGcassava4.1_009849m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]