PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.08G028100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 30233.9 Da PI: 7.8124 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.4 | 3.1e-41 | 4 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 l+pGfrF Pt+eel+++yL++k+egk+ + +++vi+ +diy+++PwdLp+ ++++ ++w+fF +r+k++a+g r++r t++gy Manes.08G028100.1.p 4 LAPGFRFYPTEEELISFYLHNKLEGKRddinTAIARVIPALDIYDFNPWDLPQlsgeLCRKDPEQWFFFLPRQKREAQGGRPSRLTTTGY 93 579************************66544444589999***********656654445677************************** PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk+tg+ v+s+ +++ + k+t+vfykgr p+g+ktdW ++eyr+ Manes.08G028100.1.p 94 WKSTGSPGYVYSStNNRCIAAKRTMVFYKGRIPHGRKTDWKLNEYRV 140 ***********9867778***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-46 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.9 | 4 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-20 | 6 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MEELAPGFRF YPTEEELISF YLHNKLEGKR DDINTAIARV IPALDIYDFN PWDLPQLSGE 60 LCRKDPEQWF FFLPRQKREA QGGRPSRLTT TGYWKSTGSP GYVYSSTNNR CIAAKRTMVF 120 YKGRIPHGRK TDWKLNEYRV IQGEASSSTC PKTMPRQDQF TLCRVYKNSK CRRAFDRRPI 180 GVQIGEPSVQ VSSEQAQRNQ QIPQPTLDRS TFEGSCTEEH GYVHGASSEL AMAIDNEPLW 240 DWEHLYNWAD YDQWRSEKGL * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-33 | 4 | 166 | 15 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.08G028100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KR605233 | 0.0 | KR605233.1 Manihot esculenta NAC transcription factors 95 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620982.1 | 0.0 | NAC domain-containing protein 90-like | ||||
TrEMBL | A0A0M4FEW1 | 0.0 | A0A0M4FEW1_MANES; NAC transcription factors 95 | ||||
STRING | cassava4.1_033374m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-76 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.08G028100.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|