PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G020700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 508aa    MW: 57074.8 Da    PI: 4.6964
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G020700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.6e-351312222102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ d++l+ +isw ++g+sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F++g++
  Manes.08G020700.1.p 131 FLSKTYDLVCDRSLDPIISWGTTGESFVVWDPVEFARVILPRNFKHNNFSSFVRQLNTYGFRKIDSDK---------WEFANEAFRRGER 211
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+ks
  Manes.08G020700.1.p 212 HLLKNIQRRKS 222
                          *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.5E-57127220IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.78E-35127220IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-36128220IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.6E-31131220IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-16131154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-16169181IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340170194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-16182194IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEPDEEKSPK SSSKPSDSSS TPEPEKKPSL SQPLIGSRMF PPGSLSMEDL SYSDSPLPAS  60
VASPLTEFGA FSATNESVYS PLEMYEFGAN PISERVPTGK SSAVDTGDYA EENVGVPHPL  120
ASLQEIPIPP FLSKTYDLVC DRSLDPIISW GTTGESFVVW DPVEFARVIL PRNFKHNNFS  180
SFVRQLNTYG FRKIDSDKWE FANEAFRRGE RHLLKNIQRR KSPQSQQVGS HNGPFTEAGK  240
SELESEIERL RKERSMMMQE VVELQQEQHG VVHHVQAVHQ RLQGAEQRQK QMISFLAKLF  300
QNPEFLARLR QKKKQGDVGL SRIKRKFVKH QQREPGQSES PAEGHIVKYR PEWTNLSSST  360
LVPDVSPAPV EQTCDYIFQE MVEMGKDAEG MAFQLENVPP NESAISDELA LAQGYIKTLE  420
QFQEGESNLG SEDLQIKGKN VISPEQKVPP EYLVSFPEDL ATEKNFPEFS SSGIERQEDV  480
WTMGFDNQAD AAIEMEISYS CWVDAVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-2312822517125Heat shock factor protein 1
5d5u_B7e-2312822026129Heat shock factor protein 1
5d5v_B7e-2312822026129Heat shock factor protein 1
5d5v_D7e-2312822026129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306314ARLRQKKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G020700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619963.10.0heat stress transcription factor A-3
TrEMBLA0A2C9VCQ40.0A0A2C9VCQ4_MANES; Uncharacterized protein
STRINGcassava4.1_028748m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.13e-92heat shock transcription factor A3