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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G008900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 522aa MW: 58641.5 Da PI: 6.5804 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.1e-09 | 415 | 462 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+++q+G+g+W+ I + + Rt+ +++++w+++l Manes.08G008900.1.p 415 WTLSEVMKLIDGIAQYGTGRWTDIKKLLFsssAYRTPVDLRDKWRNLL 462 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-13 | 404 | 466 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.846 | 407 | 466 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-9 | 411 | 464 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.71E-17 | 413 | 463 | No hit | No description |
SuperFamily | SSF46689 | 6.36E-16 | 413 | 471 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-8 | 415 | 462 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MKCQRVKVDE SFVPSVEGKA VEVQPLLAES KPDHTSIDGD AWKHLDIEDF SYGFEYGLKR 60 NYGGLDCNTT QGQDELEFGV LDGLLDEVDE VDDIHAANDI SRACEEFLLD VELAEKISDL 120 DCAPLGRLHF GDSSSESQSP GFSGSSNGVH GLSESSIAVV TDSECKIGVE NKTVKCELND 180 SSGDNWDYQA PENVFTTTHD LENLDEVDDA KPESGMSSDD NAKKPVQASN LRQKRFRKPT 240 LRYIEEFSVP KSRHAMERQK NLTADSRVIS LTIRSHDEHL GGSVTLTKEE SLSEIITQET 300 LDDDEKLSDL KSKCINRRQK FPSPASKDKC LKTESHNELN LVRGFKSVPR EGSFTGTSTQ 360 ASFESCPQRG RPKKRPYVPV PESDNEDAAS ESEGDNAKRR KSKKSADRRK HQRMWTLSEV 420 MKLIDGIAQY GTGRWTDIKK LLFSSSAYRT PVDLRDKWRN LLRASSVQKQ KLKQNKKEVD 480 QKLKHAMRPL PKSVICRILE LATVHPYPRF TPGGRYIRRK N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 237 | KKPVQASNLRQKRFRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G008900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620386.1 | 0.0 | uncharacterized protein LOC110620807 isoform X3 | ||||
TrEMBL | A0A251K930 | 0.0 | A0A251K930_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009297m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-22 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G008900.1.p |