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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Manes.08G007600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family |
ARF |
Protein Properties |
Length: 706aa MW: 77497.7 Da PI: 6.9137 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Manes.08G007600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 74.3 | 1.4e-23 | 122 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF
Manes.08G007600.1.p 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL 209
89****************************996555555..89*********************************************** PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
+ +++ l+v+++r+
Manes.08G007600.1.p 210 --RAENGDLCVGIRRA 223
..4488999****997 PP
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2 | Auxin_resp | 110.4 | 1.8e-36 | 291 | 374 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ a+++++FevvY+Prast+eF+vk++ v+ al+++++ GmRfkmafetedss++++ +Gt+++ + +dp++W++S+Wr+L+
Manes.08G007600.1.p 291 AATLAANGQPFEVVYYPRASTPEFCVKASLVKIALQIRWCSGMRFKMAFETEDSSRISWfMGTISSAQVADPLQWSDSPWRLLQ 374
68899*****************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 706 aa
Download sequence Send
to blast |
MITFMEAKER VKEVEKCLDS QLWHACAGGM VQMPAVNSKV FYFPQGHIEH ASSPVDFRNF 60 PRVPPYILCR VSSVKFMADP ETDEVYAKMK LSPITGSEPG LEEEDERVIN GGEGQENKPA 120 SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG 180 TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PESSWNPAGG 240 NCVMPYGGFS SFFRDEENKL LRNGNGNGNS SGGNGGLMGK GKVRPESVIE AATLAANGQP 300 FEVVYYPRAS TPEFCVKASL VKIALQIRWC SGMRFKMAFE TEDSSRISWF MGTISSAQVA 360 DPLQWSDSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PAIHLSPFSP PRKKLRFPQH 420 PDFPLDGQFP IPSFSGNLLG PSSPFGCLPD STPAGMQGAR HAHCGLPLSD LHLSKLQTGL 480 LPAGFPPLLD HVATHTRTSN SPMIQKPSMS ENVSCVLTMS HSTQTSKKTN DTKTPKLVLF 540 GQPILTEQQI SLSCSGGDTL SPVHTGNSSS EGNLDKMANF SDGSGSAALH QQSLPERSSC 600 EGFQWFKNNS RENETSLETG HCKVFMESED VGRTLDLSLL RSYEELYRKL ADMFSIENSE 660 TLNNVLYRDV TGAVKHIGGE PFSDFMKTAR RLTVLMDSSS DNVGL*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |