PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G001500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 479aa    MW: 52490.1 Da    PI: 8.2462
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G001500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.2e-33197253360
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Manes.08G001500.1.p 197 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 253
                          9***************************************.***************85 PP
2WRKY992.9e-31398455259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k ver ++dp ++++tYeg+Hnhe
  Manes.08G001500.1.p 398 GDGFRWRKYGQKVVKGNPYPRSYYRCTGLKCNVRKYVERVSDDPGAFITTYEGKHNHE 455
                          6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-29185254IPR003657WRKY domain
SuperFamilySSF1182907.85E-26193254IPR003657WRKY domain
SMARTSM007743.8E-37195253IPR003657WRKY domain
PfamPF031061.5E-25197251IPR003657WRKY domain
PROSITE profilePS5081123.686197254IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-31386457IPR003657WRKY domain
SuperFamilySSF1182903.92E-28391457IPR003657WRKY domain
PROSITE profilePS5081132.868392457IPR003657WRKY domain
SMARTSM007747.0E-36397456IPR003657WRKY domain
PfamPF031062.2E-24399455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEIKEAERVV IAKPVASRPT CSNFRSFSEL LAGTLNVSPP KACSESIVAA IRPRTVRFKP  60
MVNRAPASLV SSKADLSGKA PCNSYDTISE SDSKPTVIYK PQAKLVSKAT VSLLANMGNF  120
NAGHQQQTLP LVVAQIQHPS EDKHNFTSQI ISNVHQNIPS QAQTDQTTEP SRLASENQEE  180
DQKTLSAAYN RDRPSYDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCPVKK KVERSLDGQI  240
AEIVYKGEHN HSKPQPPKRN SSGTQGLGIV SDVNDQDIST PLWNNHLNER NEGSEGRVED  300
QNETGLPVHS TYQGKAPPSH DLAGTGSINA GVVTPENSCG LSGECDEGSK MEGDDDEPKI  360
KRRKNDNQSN EAGISGEGAQ AQEPCPVVQS STETEIVGDG FRWRKYGQKV VKGNPYPRSY  420
YRCTGLKCNV RKYVERVSDD PGAFITTYEG KHNHEMPARG TNSSSEPNLQ APSSRSRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-30197458878Probable WRKY transcription factor 4
2lex_A3e-30197458878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G001500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276250.0KT827625.1 Manihot esculenta WRKY transcription factor 50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621183.10.0WRKY transcription factor 44
TrEMBLA0A2C9VC550.0A0A2C9VC55_MANES; Uncharacterized protein
STRINGcassava4.1_007976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-117WRKY family protein