PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G142500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 313aa    MW: 35308.9 Da    PI: 7.625
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G142500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.22e-29166226259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqKe+ gs+fprsYYrCt+    +Cp+kk+v+r ++dp ++e+tY+g+H+++
  Manes.07G142500.1.p 166 EDGYTWRKYGQKEILGSRFPRSYYRCTHLklyQCPAKKQVQRLDDDPYTFEVTYRGDHTCH 226
                          7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-28161227IPR003657WRKY domain
SuperFamilySSF1182903.53E-26162227IPR003657WRKY domain
SMARTSM007744.1E-37165227IPR003657WRKY domain
PROSITE profilePS5081121.23166228IPR003657WRKY domain
PfamPF031061.8E-26166226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNEFISLILK GMKLAKDLEP TLQNLATHNY QHMLSNLDEI IRVFISARER LNAHQDLPQM  60
LFRELQQQPQ IDPRLQEYWL RTKMMELQHS QLEAERIGIS SGMENKQAAG GTQMGSANLA  120
MELGSRDVQA MASSSTQRQR RRKDDEEYRT IRAAAPRMGN TEIPPEDGYT WRKYGQKEIL  180
GSRFPRSYYR CTHLKLYQCP AKKQVQRLDD DPYTFEVTYR GDHTCHMSDT APSVPPPVIT  240
QEVTQSMAAQ PPPRLQFRLG GGGSGGSSGS GPSTVRYGKE VEYLVADMAD VMFNSGSSSS  300
NSMELIFTSM EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19166225968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G142500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276310.0KT827631.1 Manihot esculenta WRKY transcription factor 56 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617274.10.0WRKY transcription factor 55
TrEMBLA0A140H8R00.0A0A140H8R0_MANES; WRKY transcription factor 56
STRINGcassava4.1_027942m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-66WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]