PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G142400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 316aa    MW: 36132.1 Da    PI: 5.5906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G142400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.22.2e-25127187259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK++ ++++prsY+rCt++   gC+++k+v+  +edp++  +tY g+H+++
  Manes.07G142400.1.p 127 EDGYAWRKYGQKQILNTKYPRSYFRCTHKydqGCKATKQVQIMEEDPQMYGTTYIGHHTCR 187
                          8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25112187IPR003657WRKY domain
PROSITE profilePS5081120.151121184IPR003657WRKY domain
SuperFamilySSF1182904.05E-24123187IPR003657WRKY domain
SMARTSM007749.5E-36126188IPR003657WRKY domain
PfamPF031061.2E-24127187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAASCTGKLS SNRERAAREL VQGQEFATHL QFLLKKHYPD DGLLSADELV VKIMRSFTEA  60
LSLVTCYDFV ENFQNQTTSQ VDSVCCDDRK SEDSGESKKR ATAKERRGCY KRKKISLSWT  120
TVSATTEDGY AWRKYGQKQI LNTKYPRSYF RCTHKYDQGC KATKQVQIME EDPQMYGTTY  180
IGHHTCRDIL KVPQIITPPD SSPGHESYML TYSNSNNTPT QLDHQHHPFT WCPSTMIKQE  240
YKEETPSDLT DELSSLDSMW KDLEAFEQAD HYRAVASTEC TETASQSLDM DFAVSSVEFN  300
GDFHFDESEF NYLSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-24120187269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197113KKRATAKERRGCYKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G142400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276580.0KT827658.1 Manihot esculenta WRKY transcription factor 83 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617497.10.0probable WRKY transcription factor 70
SwissprotK4BIZ99e-49WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A140H8T70.0A0A140H8T7_MANES; WRKY transcription factor 83
STRINGcassava4.1_012154m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-50WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]