![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.07G135300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 389aa MW: 42958.2 Da PI: 4.6988 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 80 | 131 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ +g+WvAeIr+p + r r +lg+f ta+eAa a+++a+++++g+ Manes.07G135300.1.p 80 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYEAALAYDEAARAMHGA 131 56*****999.**********8...2.35**************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.21E-33 | 80 | 140 | No hit | No description |
Pfam | PF00847 | 6.3E-13 | 80 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 81 | 139 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-31 | 81 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-37 | 81 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.825 | 81 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MGTFDQASNA TFRPLDSVRK RKRREGTNSV AETLQKWKEY NKYLDTCTPN GDGKPVRKAP 60 AKGSRKGCMK GKGGPENSRC NYRGVRQRTW GKWVAEIREP NRGPRLWLGT FPTAYEAALA 120 YDEAARAMHG ALARVNFPES SNSTISSKDS HSAASYSSVA TPAGSDSTTT SNHSEVCADE 180 DSKEHIVKFG DDKGESKIKP VTEPASPCST LKQEVKKELE DVSGSDCGGI PENEVPDKTV 240 LQQYNTCVQK QKESCDLQHH KDEPLDVKDY GWDNGCEGQD YWKNFTIDEM FSVDELLGAI 300 DSNPLGLDFD GGELFADDGH VQQEPPLDLS FQLQSPDDRF IGGRERVEQV PSVGDYNFDF 360 LKPGRQEDEN VPLDDQGCFS LELSNSGF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-18 | 81 | 138 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 18 | 23 | RKRKRR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.07G135300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618998.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_021618999.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_021619000.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | A0A2C9VL72 | 0.0 | A0A2C9VL72_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029110m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40340.1 | 7e-51 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.07G135300.1.p |