PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G131700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 275aa    MW: 30217 Da    PI: 8.0514
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G131700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-1185131354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+++E+rRRdriN  +  Lr+l+Pk+      K++Ka+ L  +++ +++L
  Manes.07G131700.1.p  85 KSHSQAEKRRRDRINAQLGILRKLIPKS-----DKMDKAALLGSVIDQVRDL 131
                          68*************************8.....7********9999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.01882131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1183135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1285134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-985131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.13E-985132No hitNo description
SMARTSM003537.2E-1088137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.5E-5179226No hitNo description
SuperFamilySSF550211.07E-5180245No hitNo description
CDDcd048731.12E-7182219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEDHYSSGWP VVPPEANWSA AANFSAYDES YLFPWPQTPH SSTSTSAALL PSWSIPTQEA  60
GQGFPSWSTL PVQESAEDKA ASVSKSHSQA EKRRRDRINA QLGILRKLIP KSDKMDKAAL  120
LGSVIDQVRD LKGKAMEVSK SITIPTEFDE VTVDVDDSDD VSQDVSSTTS KQSKEDNIYV  180
RVSVCCDDRP EVFSELIRVL KGLRLSIVRA DIASVGGRVK SILVLCNKDS KEGGVSVSTI  240
KQSLNVFLSR ISSSSMPSNY RIRSKRQRFF LPSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G131700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617634.10.0transcription factor bHLH51
TrEMBLA0A2C9VL580.0A0A2C9VL58_MANES; Uncharacterized protein
STRINGcassava4.1_013720m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-44bHLH family protein