PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.07G102200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 217aa MW: 23576 Da PI: 6.4837

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G102200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.8	7.8e-43	61	160	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l Manes.07G102200.1.p 61 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNEL 150 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +a+la++++e Manes.07G102200.1.p 151 QAQLAKAQAE 160 ***99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.172	60	161	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-43	61	158	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MGNLDKAVAG ITPIAVPSPF SYSPPSSSPS LSSHSSLGLP SPSQSSPTAP PPPPPSVVLS 60 PCAACKILRR RCVEKCVLAP YFPPTEPYKF TIAHRVFGAS NIIKFLQELP ESQRADAVSS 120 MVYEANARIR DPVYGCAGAI CQLQKQVNEL QAQLAKAQAE VVNMQCQQAN LVALICMEMT 180 QSHHYQEPIF QQQQYIDTSC FLDDTNLATP WEPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-43	60	168	10	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-43	60	168	10	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G102200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021618102.1	1e-158	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2C9VMK5	1e-157	A0A2C9VMK5_MANES; Uncharacterized protein
STRING	cassava4.1_021199m	1e-157	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-63	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Manes.07G102200.1.p