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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Manes.07G099500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family |
ARF |
Protein Properties |
Length: 681aa MW: 75138.8 Da PI: 6.5077 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Manes.07G099500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 78 | 9.8e-25 | 122 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+lt+sd+++ g +++p+ +ae++ +++ + t+ ++d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF
Manes.07G099500.1.p 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILVKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL 209
89****************************986545444..8************************************************ PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
+ +++ l+v+++r+
Manes.07G099500.1.p 210 --RAENGDLCVGIRRA 223
..4488999****997 PP
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2 | Auxin_resp | 114.4 | 1e-37 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ a++ ++FevvY+Prast+eF v+++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWp S+Wr+L+
Manes.07G099500.1.p 275 AATLAANWQPFEVVYYPRASTPEFFVRASAVRAAMQIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPSSPWRLLQ 358
688999****************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 681 aa
Download sequence Send
to blast |
MIRDFGVMKS QRVAEKCLDS QLWHVCAGGM VQMPPVNSKV FYFPQGHAEH AQGNVDFSHC 60 KIPAMIPCKV SAIKYLADPE TDEVFAKIRL NPLSERDVFC LEDSSDGGLF DGTASPEKPA 120 SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TILVKDVHGE TWKFRHIYRG 180 TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG NEYPSGWNSF 240 ADYSGFLRED ENKLMGRNGN GDMKGKLKAE SVIQAATLAA NWQPFEVVYY PRASTPEFFV 300 RASAVRAAMQ IQWCPGMRFK MAFETEDSSR ISWFMGTISS VQVADPIRWP SSPWRLLQVS 360 WDEPDLLQNV KRISPWLVEL VPNMPAIHLS PFSPPRKKLR LPQPPDFSLI SQFPVPSFTG 420 NPLSSNSPLC CVSDNIPAGI QGARHTPFEL SSADLHFNKL HSGLFPVGFQ KLNHSAPTSR 480 IPSRNFMGIT ESNENISCLL TMGNPTLSSK ESSETKEPHI LLFGQLIFTE QQGSQRFSGD 540 TNGNSSSDGN PEKTTNFSDG SVSVFHQSCQ LENSSDEGSP RYGDHWKTNL SSETSHCKVF 600 LESEDVDRTL DLSLVGSCEE LHGKLANMFS IENSDMPSCV LYRDAAGAIK HTGDEPFGEL 660 LKTAKVLTLL SDSGSDNIGR *
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |