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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Manes.07G038600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 230aa MW: 26103.8 Da PI: 7.511 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.07G038600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 86.2 | 1.8e-27 | 18 | 68 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n++ rqvtfskRr g++KKA+ELS+LCd+e+a+++fs tgkl+ey+s
Manes.07G038600.1.p 18 KKIDNNTARQVTFSKRRRGLFKKAYELSTLCDVEIALMVFSATGKLFEYAS 68
68***********************************************86 PP
|
| 2 | K-box | 52.3 | 2.4e-18 | 95 | 180 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ + ++a L keie+ r++R++ Ge+L+ L+++eLqqLe+ Le+slk++ ++K e+l ++i+ l+ +l+een++L+k+++
Manes.07G038600.1.p 95 LQLKNGNIAALSKEIEERIRQLRQMRGEELHGLNIEELQQLENLLERSLKRVSETKGEILANEINALKSEGAQLKEENERLKKQMM 180
5555667899999999999999*************************************************************986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 5.1E-39 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 29.576 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.45E-30 | 11 | 82 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.55E-39 | 12 | 77 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 12 | 66 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.6E-27 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.2E-25 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.6E-27 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.6E-27 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 12.514 | 95 | 185 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.2E-15 | 100 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MSFDCLSLEM TRQKIQIKKI DNNTARQVTF SKRRRGLFKK AYELSTLCDV EIALMVFSAT 60
GKLFEYASSS MNQVIERRNL HPKNVGKLDQ TSLELQLKNG NIAALSKEIE ERIRQLRQMR 120
GEELHGLNIE ELQQLENLLE RSLKRVSETK GEILANEINA LKSEGAQLKE ENERLKKQMM 180
KERGGTMHLF EAGGQSSDSM ITNTSSSVDP AQDFEDSYTL LRLGLPFSD*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY486565 | 8e-74 | AY486565.1 Hevea brasiliensis clone mHbCIRa268 microsatellite sequence. |
