PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G013000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 456aa    MW: 50218 Da    PI: 5.4134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G013000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-13250296354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h + Er+RR+++ ++++ L++l+P++     +K++ a+++  A++YIk+L
  Manes.07G013000.1.p 250 TKHFATERQRRQHLTDKYQALKDLVPNP-----TKNDRASVVGDAINYIKEL 296
                          78**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.41E-14244311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.786247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-11250296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-11250300No hitNo description
Gene3DG3DSA:4.10.280.103.3E-12250305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MYEETGCFDP NSMVEGPDDG LSQVLQPPPP PPLMAGSTTN SHNSFEENLK LSTEELSYHH  60
SNQEDATAAM ELQLQNQQMA FNTHLMQDSS NQVLAFTSSS LADASYTPTA DLLNIFHLPR  120
CSPSSLLPNS SISFANPTHT APLGFVGDLP MTDTASASSI LYDPLFHLNL PPQPPLFREL  180
FQSLPSHGYS LSGSRGSSLF GGGGDDHVEG SGGGGLYQDG DGEQQFDNGV LEFTWDMACM  240
GKGRKSGKIT KHFATERQRR QHLTDKYQAL KDLVPNPTKN DRASVVGDAI NYIKELLRNV  300
NELKILVERK RCARERNKRL KTEEDSIGNN GHETSSIIKP LGDPDQSFNN ISLRSSWLQR  360
KSKDTEVDVR IVDDEVTIKL VQRKKINCLL SVSKVLDELQ LDLHHVAGGH IGDYYSFLFN  420
TKIYEGSSVY ASAIANKLIE VVDRQYASTP SSSCY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G013000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617232.10.0transcription factor bHLH91-like
TrEMBLA0A2C9VHJ10.0A0A2C9VHJ1_MANES; Uncharacterized protein
STRINGcassava4.1_028473m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-101bHLH family protein