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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Manes.07G000300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family |
Trihelix |
Protein Properties |
Length: 562aa MW: 63935.1 Da PI: 6.7077 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Manes.07G000300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 94.4 | 1.1e-29 | 125 | 210 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l+L+++r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea
Manes.07G000300.1.p 125 RWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMyEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 210
8*************************************99******************************98..55667*******85 PP
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2 | trihelix | 54.5 | 3e-17 | 416 | 496 | 2 | 81 |
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
Wt+ e+ L+++r++me+r++++ +++lWee+s+km+ g+e+s+ +C+ekw+n ++ kk ke+ ++ ++ +s+ +
Manes.07G000300.1.p 416 WTEAETARLMQLRSNMESRFQQSGcmEEEALWEEISAKMAYMGYEKSALMCEEKWKNKEGNNKKRKENTRG-SCYFQSNESI 496
*********************96435889*************************************99886.5766666555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 562 aa
Download sequence Send
to blast |
MEMEDHNHHN QYNIDLRQFI SGRPIHFPAI PQPSPTELFA AHRSLPPQTR HYDMMMLMPR 60 SGGLHDFHSD STTAACVPPP PPPPPAATAA ANSGNTTVAA TSATPTLSGL EAEIGSFGGD 120 AGTGRWPRQE TLTLLDIRSR LDSKFKEANQ KGPLWDEVSR IMYEEHGYQR SGKKCREKFE 180 NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGETSNPAL VPETQFGGTG LRFHSSNQAN 240 NGIFHSQKLC DSLSLSDSAE FDTSSEENDL STGTLMENGS TEKRRKRRDG KSWKTKIKDF 300 IDSQMRKLIE RQEAWLEKVT KTLEQKEQER TLREEEWRKR EAARIDREQK FWAKERAWIE 360 ARDAALMETL RKLTGREVNA SSAEELIRVY EIQNQRENGI ESGSERAHNS LKCESWTEAE 420 TARLMQLRSN MESRFQQSGC MEEEALWEEI SAKMAYMGYE KSALMCEEKW KNKEGNNKKR 480 KENTRGSCYF QSNESIYNPG GTYCEINEQG PETVRLQANE GSSPANSNAG NTVSESCFRF 540 LMGDGGENLW ENYGLKLSKG D*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC184063 | 8e-45 | AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence. |
GenBank | AC214419 | 8e-45 | AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence. |