PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.06G166200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 412aa MW: 47139 Da PI: 6.3669

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G166200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.7	8.5e-20	80	176	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +Wt++ v++Li+++ +++ + +k+++W+ vsk m ++ +++sp+qC++k+++lnkryk+++++ +++ +++++++ Manes.06G166200.1.p 80 KWTDNVVRLLIAVVACAGDDGAFEGveglkrksgilQKEGKWKTVSKIMISKRCHVSPQQCEDKFNDLNKRYKRLNDILGREtSCRVVEN 169 7***********9766666654333555666788******************************************9956999999 PP trihelix 79 cpyfdql 85 ++ d++ Manes.06G166200.1.p 170 PALMDSM 176 8888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-17	78	203	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MNLVGGLEND HQTIGLMEVK VSIPKEYSVS FSKGKAVSCF TATNDGSVSE DDEPSFTEDS 60 NGENYIGAKG KKGSPWQRMK WTDNVVRLLI AVVACAGDDG AFEGVEGLKR KSGILQKEGK 120 WKTVSKIMIS KRCHVSPQQC EDKFNDLNKR YKRLNDILGR ETSCRVVENP ALMDSMPHLS 180 AKAKDDVRKI LSSKHLFYKE MCAYHNGQRI PNCQDLDLQG SSLPIERCSR DNNGSEEEEA 240 EGHDDSDDDE SDSEGDLKAK KDEEKMGKFK SSKVNEEDDH LWSQSGICNG FEVEMSGIFQ 300 DPTVSLWEKK KWIKKQKFQL LEQRRVCILA QAFELEKQHI KWLRYCSKKD REFERLRLEN 360 ERMRLENEQS ILQLRQKQLE MDFRSSETSR HPTSLGIDRM QGRDQIDLGR H*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MNLVGGLEND HQTIGLMEVK VSIPKEYSVS FSKGKAVSCF TATNDGSVSE DDEPSFTEDS  60
NGENYIGAKG KKGSPWQRMK WTDNVVRLLI AVVACAGDDG AFEGVEGLKR KSGILQKEGK  120
WKTVSKIMIS KRCHVSPQQC EDKFNDLNKR YKRLNDILGR ETSCRVVENP ALMDSMPHLS  180
AKAKDDVRKI LSSKHLFYKE MCAYHNGQRI PNCQDLDLQG SSLPIERCSR DNNGSEEEEA  240
EGHDDSDDDE SDSEGDLKAK KDEEKMGKFK SSKVNEEDDH LWSQSGICNG FEVEMSGIFQ  300
DPTVSLWEKK KWIKKQKFQL LEQRRVCILA QAFELEKQHI KWLRYCSKKD REFERLRLEN  360
ERMRLENEQS ILQLRQKQLE MDFRSSETSR HPTSLGIDRM QGRDQIDLGR H*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G166200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021617153.1	0.0	uncharacterized protein LOC110618304
TrEMBL	A0A2C9VSY5	0.0	A0A2C9VSY5_MANES; Uncharacterized protein
STRING	cassava4.1_008712m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10546	32	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-68	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Manes.06G166200.1.p