PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G163900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NF-YA | ||||||||
Protein Properties | Length: 351aa MW: 38302 Da PI: 8.476 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.6 | 7.4e-32 | 174 | 230 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg gGrF Manes.06G163900.1.p 174 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGIGGRF 230 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.4E-35 | 172 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.652 | 173 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.2E-27 | 175 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.2E-23 | 176 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 178 | 198 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.2E-23 | 207 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MQSKSAGANR AEPDPRVIQP NSVHSEPWWR SIDYSTISPA VPGGNAFNFS SPDGPNGSLS 60 NDDESLSNER LNENDDDASK ASQATASERS VVNCGQEHTT VRDVSSSVTT RHDGCLTQPP 120 QLELVGHSIA CTSNPYQDPY YSGMMAAYGH QPLSYSHLLG MHHARMPLPL EMAQEPVYVN 180 AKQYQGILRR RQARAKAELE KKLIKVRKPY LHESRHQHAM RRARGIGGRF AKKTHADASK 240 NTTEGKGNDS GPGPTPQYGR SSGSERLPSD SAEVWVLPHG QQVARSSQVH GTSETNDQVN 300 GGTFYHNCSG LQTSTRHSHS IEKRDEGDCS GQQRGRISSN QASQRPVAIQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-18 | 174 | 230 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G163900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617065.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Swissprot | Q9LXV5 | 1e-79 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A2C9VRH9 | 0.0 | A0A2C9VRH9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010819m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 2e-79 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G163900.1.p |
Publications ? help Back to Top | |||
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