PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G157300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 362aa    MW: 40268.4 Da    PI: 5.6459
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G157300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86e-30131192159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H+++
  Manes.06G157300.1.p 131 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRivqGCLATKQVQRSDEDPTIFEITYRGRHTCN 192
                          59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.986126194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-29128193IPR003657WRKY domain
SuperFamilySSF1182902.48E-26130193IPR003657WRKY domain
SMARTSM007741.7E-41131193IPR003657WRKY domain
PfamPF031067.9E-27132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDNMGDWEQT KNLVNELTLG RELARQLQIH LNVPSSSRET REVLVQKILA SFEKSLSVLN  60
LSSSIRETNP TGFAIGMSES PPSLSGSPRS EDSDRDFKDH DPKDGSRKRK GTPRWTQQVR  120
VNPGMGLEGP LDDGFSWRKY GQKDILGAKY PRGYYRCTHR IVQGCLATKQ VQRSDEDPTI  180
FEITYRGRHT CNQASHMLPP SQPLENQEPN SGMEQPQQQQ ENQQQSQDLL NIRSGLKVIT  240
EGLDSHEQSV PPSHFLSGSN FKAENQVFSP PTVDKSFKGI YSQSNFISPT TSGKSYFSAS  300
SSGMQHYLGG NQNFQTSEFE LNDIISAATS TTDSPTVGLD FPFGNVEFDP NFTFDNSGFL  360
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20131191868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G157300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276260.0KT827626.1 Manihot esculenta WRKY transcription factor 51 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615159.10.0probable WRKY transcription factor 30
TrEMBLA0A140H8Q50.0A0A140H8Q5_MANES; WRKY transcription factor 51
STRINGcassava4.1_010398m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-62WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]