PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G153600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 413aa    MW: 45133.4 Da    PI: 6.0132
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G153600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.2e-31199257259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+++++ Y+geH+h+
  Manes.06G153600.1.p 199 NDVWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDPNMFIVSYTGEHTHP 257
                          8**************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-31185259IPR003657WRKY domain
SuperFamilySSF1182903.92E-27191259IPR003657WRKY domain
PROSITE profilePS5081133.625193259IPR003657WRKY domain
SMARTSM007745.7E-38198258IPR003657WRKY domain
PfamPF031062.4E-26199257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLSMAEDWDL YAVVRSCTTS ATNTAATANA EVSGQNANFE NHLCCLASLT FEADEPFSFP  60
DLEKPRNDGL QELQDSYKAF LPITTVQGNI PTSSISDFGG FIGQNQSQLA QQQQQLHHPP  120
PHGNIPFGLR FNHRQPQPQH ARQQPNQRQQ LHQLGSQRPE TSPSFLPLRA TQSSASRSRK  180
KKSHQKRQVM HVTAENLSND VWAWRKYGQK PIKGSPYPRN YYRCSSSKGC AARKQVERSN  240
TDPNMFIVSY TGEHTHPRPT HRNSLAGSTR NKFSAIQKPA NKESEEPSAE KAPCSSPLSA  300
TSLSPTTPLS APMDHETANE NINTEAAKMD GADLESHGMD SDGEYYEDDD DILIPNMTFN  360
EDLIKDLQEL GTVGDGSFGI GSNSSGGLGQ TPDFGDNFFS WSVGSSAGGG GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-202002601880Disease resistance protein RRS1
5w3x_D2e-202002601880Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183KKKSH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G153600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276440.0KT827644.1 Manihot esculenta WRKY transcription factor 69 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615285.10.0probable WRKY transcription factor 27
TrEMBLA0A2C9VR600.0A0A2C9VR60_MANES; Uncharacterized protein
STRINGcassava4.1_008781m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-50WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]