PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G145500.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 758aa MW: 83666.1 Da PI: 5.9769

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G145500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.3	4.2e-21	61	116	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Manes.06G145500.3.p 61 KKKYHRHTPNQIQELETFFKQCPHPDEKQRMELSRRLGLESKQIKFWFQNRRTQMK 116 79999************************************************999 PP
2	START	192.1	2.8e-60	266	488	2	206
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la++a++el+k a+ ++p+W+++ + ++ +e++++f++ + + +ea r++g+v+ ++ l e+l+d++ +W e ++ ka Manes.06G145500.3.p 266 LALAAMDELIKIAQIDSPLWMTMDggkDALKHEEYMRTFSPCIGvkpssFVTEATRETGIVIINSLALAETLMDVN-RWLEAFPgliaKA 354 6899*******************9999*******9988999***********************.********* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++vissg galqlm ae+q++sp vp R + f+R+++q+ +g+w++vdvS+d +q+ ++s+s++ ++++pSg+++++++ng s Manes.06G145500.3.p 355 STIDVISSGvggtknGALQLMHAEFQVGSPFVPvRQVRFLRFCKQHAEGVWAVVDVSIDANQESSNSHSFAACRRFPSGCIMQDMPNGCS 444 ************************************************************************************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +vtwveh +++++ +h+l+rs+++sgla+ga++wvatlqr+ce+ Manes.06G145500.3.p 445 RVTWVEHSEYDESAVHQLYRSVLSSGLAFGARRWVATLQRYCEC 488 ****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-21	46	112	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.88E-20	48	118	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.848	58	118	IPR001356	Homeobox domain
SMART	SM00389	4.3E-18	60	122	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-18	61	116	IPR001356	Homeobox domain
CDD	cd00086	1.68E-19	61	118	No hit	No description
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.388	256	491	IPR002913	START domain
SuperFamily	SSF55961	3.52E-29	257	488	No hit	No description
CDD	cd08875	3.42E-114	260	487	No hit	No description
SMART	SM00234	2.9E-44	265	488	IPR002913	START domain
Pfam	PF01852	4.9E-53	266	488	IPR002913	START domain
SuperFamily	SSF55961	1.43E-19	516	751	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MLVQKGTMDS HGDMGLLGEH FDPSIAGRMK EDGYESKSGS DNLEGASGDD QEAGEDQRTQ 60 KKKYHRHTPN QIQELETFFK QCPHPDEKQR MELSRRLGLE SKQIKFWFQN RRTQMKTQLE 120 RHENIILRQE NDKLRAENEL LKQNMTDPIC NNCGSPVVPG PVSYEQQQLR IENARLNDEL 180 GRVYALANKF LGRPLSSSSG HVPPFDSNSK LDLSVGRNGY GGLGSIETSL PIGLDYSDGL 240 TMPLMKPMTS PMLNEVPYDR SLFIDLALAA MDELIKIAQI DSPLWMTMDG GKDALKHEEY 300 MRTFSPCIGV KPSSFVTEAT RETGIVIINS LALAETLMDV NRWLEAFPGL IAKASTIDVI 360 SSGVGGTKNG ALQLMHAEFQ VGSPFVPVRQ VRFLRFCKQH AEGVWAVVDV SIDANQESSN 420 SHSFAACRRF PSGCIMQDMP NGCSRVTWVE HSEYDESAVH QLYRSVLSSG LAFGARRWVA 480 TLQRYCECMS ILMSPTISAE DQTVINISGK KSMLKLARRM VDNFCSGVCA SSVHKWDKLL 540 VGNVGEDMRI LTRKNINDPG EPPGIVLSAA TSVWLPVMRD RLFDFLRDER SRSEWDILSH 600 GGMMQEMVHI SKGHNRGNCV SLLRSTAVSP NANENSMIIL QETWNDASSS LVVYAPVDIQ 660 SISVVMNGGD STYVALLPSG FVILPDDTSS QGGPNFSSTL VKRDSDGGDG GGSILTVGFQ 720 ILVNNLPTAK LTVESVETVN NLISCTIQRI KTVLQLT*

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MLVQKGTMDS HGDMGLLGEH FDPSIAGRMK EDGYESKSGS DNLEGASGDD QEAGEDQRTQ  60
KKKYHRHTPN QIQELETFFK QCPHPDEKQR MELSRRLGLE SKQIKFWFQN RRTQMKTQLE  120
RHENIILRQE NDKLRAENEL LKQNMTDPIC NNCGSPVVPG PVSYEQQQLR IENARLNDEL  180
GRVYALANKF LGRPLSSSSG HVPPFDSNSK LDLSVGRNGY GGLGSIETSL PIGLDYSDGL  240
TMPLMKPMTS PMLNEVPYDR SLFIDLALAA MDELIKIAQI DSPLWMTMDG GKDALKHEEY  300
MRTFSPCIGV KPSSFVTEAT RETGIVIINS LALAETLMDV NRWLEAFPGL IAKASTIDVI  360
SSGVGGTKNG ALQLMHAEFQ VGSPFVPVRQ VRFLRFCKQH AEGVWAVVDV SIDANQESSN  420
SHSFAACRRF PSGCIMQDMP NGCSRVTWVE HSEYDESAVH QLYRSVLSSG LAFGARRWVA  480
TLQRYCECMS ILMSPTISAE DQTVINISGK KSMLKLARRM VDNFCSGVCA SSVHKWDKLL  540
VGNVGEDMRI LTRKNINDPG EPPGIVLSAA TSVWLPVMRD RLFDFLRDER SRSEWDILSH  600
GGMMQEMVHI SKGHNRGNCV SLLRSTAVSP NANENSMIIL QETWNDASSS LVVYAPVDIQ  660
SISVVMNGGD STYVALLPSG FVILPDDTSS QGGPNFSSTL VKRDSDGGDG GGSILTVGFQ  720
ILVNNLPTAK LTVESVETVN NLISCTIQRI KTVLQLT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G145500.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614580.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2C9VQU2	0.0	A0A2C9VQU2_MANES; Uncharacterized protein
STRING	cassava4.1_002279m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.06G145500.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]