PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G145500.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 751aa MW: 82908.1 Da PI: 5.8666

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G145500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.3	4.1e-21	54	109	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Manes.06G145500.2.p 54 KKKYHRHTPNQIQELETFFKQCPHPDEKQRMELSRRLGLESKQIKFWFQNRRTQMK 109 79999************************************************999 PP
2	START	192.1	2.7e-60	259	481	2	206
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la++a++el+k a+ ++p+W+++ + ++ +e++++f++ + + +ea r++g+v+ ++ l e+l+d++ +W e ++ ka Manes.06G145500.2.p 259 LALAAMDELIKIAQIDSPLWMTMDggkDALKHEEYMRTFSPCIGvkpssFVTEATRETGIVIINSLALAETLMDVN-RWLEAFPgliaKA 347 6899*******************9999*******9988999***********************.********* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++vissg galqlm ae+q++sp vp R + f+R+++q+ +g+w++vdvS+d +q+ ++s+s++ ++++pSg+++++++ng s Manes.06G145500.2.p 348 STIDVISSGvggtknGALQLMHAEFQVGSPFVPvRQVRFLRFCKQHAEGVWAVVDVSIDANQESSNSHSFAACRRFPSGCIMQDMPNGCS 437 ************************************************************************************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +vtwveh +++++ +h+l+rs+++sgla+ga++wvatlqr+ce+ Manes.06G145500.2.p 438 RVTWVEHSEYDESAVHQLYRSVLSSGLAFGARRWVATLQRYCEC 481 ****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-21	39	105	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.84E-20	41	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.848	51	111	IPR001356	Homeobox domain
SMART	SM00389	4.3E-18	53	115	IPR001356	Homeobox domain
CDD	cd00086	1.65E-19	54	111	No hit	No description
Pfam	PF00046	1.2E-18	54	109	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.388	249	484	IPR002913	START domain
SuperFamily	SSF55961	3.41E-29	250	481	No hit	No description
CDD	cd08875	2.82E-114	253	480	No hit	No description
SMART	SM00234	2.9E-44	258	481	IPR002913	START domain
Pfam	PF01852	4.8E-53	259	481	IPR002913	START domain
SuperFamily	SSF55961	1.43E-19	509	744	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
MDSHGDMGLL GEHFDPSIAG RMKEDGYESK SGSDNLEGAS GDDQEAGEDQ RTQKKKYHRH 60 TPNQIQELET FFKQCPHPDE KQRMELSRRL GLESKQIKFW FQNRRTQMKT QLERHENIIL 120 RQENDKLRAE NELLKQNMTD PICNNCGSPV VPGPVSYEQQ QLRIENARLN DELGRVYALA 180 NKFLGRPLSS SSGHVPPFDS NSKLDLSVGR NGYGGLGSIE TSLPIGLDYS DGLTMPLMKP 240 MTSPMLNEVP YDRSLFIDLA LAAMDELIKI AQIDSPLWMT MDGGKDALKH EEYMRTFSPC 300 IGVKPSSFVT EATRETGIVI INSLALAETL MDVNRWLEAF PGLIAKASTI DVISSGVGGT 360 KNGALQLMHA EFQVGSPFVP VRQVRFLRFC KQHAEGVWAV VDVSIDANQE SSNSHSFAAC 420 RRFPSGCIMQ DMPNGCSRVT WVEHSEYDES AVHQLYRSVL SSGLAFGARR WVATLQRYCE 480 CMSILMSPTI SAEDQTVINI SGKKSMLKLA RRMVDNFCSG VCASSVHKWD KLLVGNVGED 540 MRILTRKNIN DPGEPPGIVL SAATSVWLPV MRDRLFDFLR DERSRSEWDI LSHGGMMQEM 600 VHISKGHNRG NCVSLLRSTA VSPNANENSM IILQETWNDA SSSLVVYAPV DIQSISVVMN 660 GGDSTYVALL PSGFVILPDD TSSQGGPNFS STLVKRDSDG GDGGGSILTV GFQILVNNLP 720 TAKLTVESVE TVNNLISCTI QRIKTVLQLT *

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

MDSHGDMGLL GEHFDPSIAG RMKEDGYESK SGSDNLEGAS GDDQEAGEDQ RTQKKKYHRH  60
TPNQIQELET FFKQCPHPDE KQRMELSRRL GLESKQIKFW FQNRRTQMKT QLERHENIIL  120
RQENDKLRAE NELLKQNMTD PICNNCGSPV VPGPVSYEQQ QLRIENARLN DELGRVYALA  180
NKFLGRPLSS SSGHVPPFDS NSKLDLSVGR NGYGGLGSIE TSLPIGLDYS DGLTMPLMKP  240
MTSPMLNEVP YDRSLFIDLA LAAMDELIKI AQIDSPLWMT MDGGKDALKH EEYMRTFSPC  300
IGVKPSSFVT EATRETGIVI INSLALAETL MDVNRWLEAF PGLIAKASTI DVISSGVGGT  360
KNGALQLMHA EFQVGSPFVP VRQVRFLRFC KQHAEGVWAV VDVSIDANQE SSNSHSFAAC  420
RRFPSGCIMQ DMPNGCSRVT WVEHSEYDES AVHQLYRSVL SSGLAFGARR WVATLQRYCE  480
CMSILMSPTI SAEDQTVINI SGKKSMLKLA RRMVDNFCSG VCASSVHKWD KLLVGNVGED  540
MRILTRKNIN DPGEPPGIVL SAATSVWLPV MRDRLFDFLR DERSRSEWDI LSHGGMMQEM  600
VHISKGHNRG NCVSLLRSTA VSPNANENSM IILQETWNDA SSSLVVYAPV DIQSISVVMN  660
GGDSTYVALL PSGFVILPDD TSSQGGPNFS STLVKRDSDG GDGGGSILTV GFQILVNNLP  720
TAKLTVESVE TVNNLISCTI QRIKTVLQLT *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G145500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614580.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2C9VR06	0.0	A0A2C9VR06_MANES; Uncharacterized protein
STRING	cassava4.1_002279m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.06G145500.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]