PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G144900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family FAR1
Protein Properties Length: 870aa    MW: 100352 Da    PI: 6.08
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G144900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.81.3e-2672158188
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          +fYn+YA+ vGFsvrk+  ++sk +g +++r+f+Cskeg+r+++k++  + +++r+etrtgC a++ ++++ +gk++vt++e eHnH+
  Manes.06G144900.1.p  72 SFYNKYARLVGFSVRKDWVNRSKVHGLVVSRKFTCSKEGYRRKDKRD-ANVKKHRKETRTGCLAHMIITRQPNGKYRVTHFEAEHNHD 158
                          5*******************************************999.99999**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-2472158IPR004330FAR1 DNA binding domain
PfamPF105511.5E-29282376IPR018289MULE transposase domain
PROSITE profilePS5096610.62562598IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-5573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MIRDGDDLVS PHDEDMDAGL QTSDRLDLNL DQDSVVTQIT GAQCSPSSKG DSITDGVLKI  60
GAEFESDEHA YSFYNKYARL VGFSVRKDWV NRSKVHGLVV SRKFTCSKEG YRRKDKRDAN  120
VKKHRKETRT GCLAHMIITR QPNGKYRVTH FEAEHNHDNI NPNSGQTLSF QKELCVAEAA  180
EADLPSNLGT ESNSTFELMN RRFEVFDSLD YIAMDFDNYL QSERIRDMKR GEAGRLLRYF  240
QRLHFENPTF FHAIQVDVDD KISNIFWADD AMVVDYDHFG DVICLDTTYL TNKVIQPFVQ  300
FIGVNHHNQA IIFAAALLFD DTVESLKWLL RTFLEAMSRK KPKVIVTDQD AAIVEAIKSV  360
LPETSHRICV WQMFQNALKH LSQALKDTEP LSCDFRSCIY DHNDDEDFVH AWEALLDKYG  420
LQQNEWLRWM FREREKWSII YGKNSYFLDA KGFHVAEALH KDLRSNLNSD QDALQFFKVF  480
QRMVDKQRLK EIQANDDMTR CMPRLMGNVV LLKHASDIYT PSAFEIFQRE YEKCLNFVVS  540
QCSESSLFLI YKVNKFGQSQ EYTVTFNPSD DAVNCSCMKF ENVGFLCSHA LKVLDNRNIK  600
VVPSQYILKR WTKYARVENM RESKEFIAQE NPKSVAGIRY KTLCHRMLKI SVRAAESEEA  660
FQYASRQLDE VIEAVEKILM LKPEEAHGII SSSTAANVSE SENAETFLDE KTVDDQDENN  720
RVAAIKDNED TLPDRHQLKY VKKKSFKRKG FPSAQPPEPY TVTSVSSPQE ACVSTEAPTP  780
NPLLQGLYNF ESNQEIQFMY HQQNPVTSHQ DSPTILYQQS NFYSDQHDSP RQTPLLQAMD  840
LDIQHPQPSS FMLYDHRYRA SDTSYVRSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G144900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616441.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2C9VQV70.0A0A2C9VQV7_MANES; Uncharacterized protein
STRINGPOPTR_0012s13550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-116FAR1-related sequence 5