PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

ERF

Protein Properties

Length: 231aa MW: 24770.4 Da PI: 5.2898

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G143200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.2	1.5e-16	64	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykG+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Manes.06G143200.1.p 64 PSYKGIR--SRSGKWVSEIREPRK---TTRIWLGTYSTPEMAAAAYDVAALALKG 113 579*6..678*****843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.7E-10	64	113	IPR001471	AP2/ERF domain
CDD	cd00018	1.83E-15	64	123	No hit	No description
SMART	SM00380	1.0E-26	65	127	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.243	65	121	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.2E-26	65	123	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-17	66	123	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MADSYGNAPS RDHQPPPYSN IQVPADPVVL QQDQSPRSTS SNPSPRPIRS LGRSSSYPAN 60 GRHPSYKGIR SRSGKWVSEI REPRKTTRIW LGTYSTPEMA AAAYDVAALA LKGPHTPLNF 120 PESILSYPIP TSTSARDIQA AATSAAAARQ PKIETGSNQD AGRLAAEGMS SISSYVESSQ 180 EFIDEDMFLN LPNLLVDMAG AMMVSPPRIN TQSSDDSPGD SDAEGLWSYQ *

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G143200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021615422.1	1e-166	ethylene-responsive transcription factor ERF027
Swissprot	Q9FJ90	6e-45	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A2C9VQU1	1e-165	A0A2C9VQU1_MANES; Uncharacterized protein
STRING	cassava4.1_033866m	1e-166	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	2e-41	ERF family protein

Link Out ? help Back to Top
Phytozome	Manes.06G143200.1.p

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]