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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G143100.1.p | ||||||||
Common Name | DREB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25542.7 Da PI: 5.4191 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 67 | 117 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+++l+g Manes.06G143100.1.p 67 PVYRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAALALRG 117 68*****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-14 | 67 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-31 | 68 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 68 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.958 | 68 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 68 | 127 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-9 | 69 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.98E-32 | 69 | 127 | No hit | No description |
PRINTS | PR00367 | 3.2E-9 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDVFSHYPDP LSFANHSSSL DLPDSSSLSD HGCSAPRASL SDEEVLLASS YPKKRAGRKK 60 FRETRHPVYR GVRRRNSGKW VCEVREPNKK SRIWLGTFPT AEMAARAHDV AALALRGRSA 120 CLNFADSSWR LPVPASTDAK DIQKAAAEAA MAFQPVGTEG FSEEIKRENK KTTGEESEDV 180 FYMDEEAIFG MPGLLAYMAE GMLLPPPQCV EESGEDKEMT AADMSLWSFS I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 66 | 124 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G143100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN615574 | 0.0 | JN615574.1 Manihot esculenta dehydration-responsive element-binding protein 2 (DREB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021616052.1 | 1e-171 | dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | Q9FJ93 | 4e-83 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | V9INN3 | 1e-170 | V9INN3_MANES; Dehydration-responsive element-binding protein 2 | ||||
STRING | cassava4.1_015361m | 1e-171 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 6e-69 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G143100.1.p |
Publications ? help Back to Top | |||
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