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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Manes.06G131200.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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| Family |
ERF |
| Protein Properties |
Length: 286aa MW: 31753.3 Da PI: 9.7492 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.06G131200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 65.4 | 1.1e-20 | 118 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka++ a+ +l+g
Manes.06G131200.1.p 118 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDSAAFRLRG 168
8********.**********9...4345*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MASSGQASTL ELIRQYLFTD SASNDNLDFI SNLDTFPNSS PVLFRTESQE FDCLKPQQSH 60
KHHMELSKPQ LVQNSNSTLK SSTLSQRKPA MSNISIPPPA TLKAIPPQQP SDSSGEKHYR 120
GVRRRPWGKY AAEIRDPNKK GARVWLGTFD TAIEAAKAYD SAAFRLRGSK AILNFPLEVG 180
NFNSRQESEF TDNNNNNNNN NNNNNDSKKR KIEVTESFES SRNKVVKTEN PSPERDGKPP 240
QSTDPLTPSS WKGFWDGDVM GIFSVPPLSP LSPHPSIGYS RVMVV*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ914648 | 2e-68 | JQ914648.1 Hevea brasiliensis AP2/ERF super family protein (ERF4) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Moore M,Vogel M,Dietz K
The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
Plant Signal Behav, 2014. 9(10): p. 976479
[PMID:25482793] - Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
Plant Cell Environ., 2017. 40(1): p. 108-120
[PMID:27723941] - König K,Vaseghi MJ,Dreyer A,Dietz KJ
The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
Physiol Plant, 2018. 162(3): p. 262-273
[PMID:28984358]
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