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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G131200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 31753.3 Da PI: 9.7492 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 118 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka++ a+ +l+g Manes.06G131200.1.p 118 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDSAAFRLRG 168 8********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.98E-32 | 117 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 117 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-14 | 118 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-37 | 118 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 118 | 178 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.645 | 118 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-13 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-13 | 158 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MASSGQASTL ELIRQYLFTD SASNDNLDFI SNLDTFPNSS PVLFRTESQE FDCLKPQQSH 60 KHHMELSKPQ LVQNSNSTLK SSTLSQRKPA MSNISIPPPA TLKAIPPQQP SDSSGEKHYR 120 GVRRRPWGKY AAEIRDPNKK GARVWLGTFD TAIEAAKAYD SAAFRLRGSK AILNFPLEVG 180 NFNSRQESEF TDNNNNNNNN NNNNNDSKKR KIEVTESFES SRNKVVKTEN PSPERDGKPP 240 QSTDPLTPSS WKGFWDGDVM GIFSVPPLSP LSPHPSIGYS RVMVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-30 | 117 | 179 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G131200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ914648 | 2e-68 | JQ914648.1 Hevea brasiliensis AP2/ERF super family protein (ERF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614518.1 | 0.0 | ethylene-responsive transcription factor ERF105-like | ||||
Swissprot | Q8VY90 | 6e-61 | EF105_ARATH; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A2C9VQK9 | 0.0 | A0A2C9VQK9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013315m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 8e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G131200.1.p |
Publications ? help Back to Top | |||
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