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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G131100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27664.1 Da PI: 7.79 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.6e-20 | 124 | 175 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrdp +ng +r++lg++ taeeAa a+++a+ +++g Manes.06G131100.1.p 124 THYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAALAYDRAAFRMRG 175 68********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.96E-32 | 124 | 184 | No hit | No description |
Pfam | PF00847 | 2.8E-15 | 124 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.408 | 125 | 183 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 125 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-23 | 125 | 185 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-37 | 125 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDDSNLSHHY LRTSYYNTLI PCLTDNWGDL PFKVDDSEDM LVYNFLWDAV SSGWSPVDFT 60 STSPIQTTTT AVKPEPMDEL GLTTPVHPQE AASTLSFLQT SILENTSGAF RLATTSNKKV 120 HKGTHYRGVR QRPWGKFAAE IRDPAKNGAR VWLGTYETAE EAALAYDRAA FRMRGSRAML 180 NFPHRIGFNE PEPVRITAKR RDSESEMPVS SKRRKGPAAN QAELGRDRGY GVGHQIVVMA 240 AGEQLLVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-37 | 122 | 190 | 2 | 70 | ATERF1 |
3gcc_A | 1e-37 | 122 | 190 | 2 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 214 | KRRDSESEMPVSSKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G131100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615191.1 | 0.0 | ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q9LW50 | 2e-84 | ERF2_NICSY; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A2C9VQF1 | 0.0 | A0A2C9VQF1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028940m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2239 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-49 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G131100.1.p |