PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G131100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 249aa    MW: 27664.1 Da    PI: 7.79
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G131100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20124175155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  Manes.06G131100.1.p 124 THYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAALAYDRAAFRMRG 175
                          68********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-32124184No hitNo description
PfamPF008472.8E-15124175IPR001471AP2/ERF domain
PROSITE profilePS5103224.408125183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-32125184IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-23125185IPR016177DNA-binding domain
SMARTSM003801.8E-37125189IPR001471AP2/ERF domain
PRINTSPR003675.5E-11126137IPR001471AP2/ERF domain
PRINTSPR003675.5E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDDSNLSHHY LRTSYYNTLI PCLTDNWGDL PFKVDDSEDM LVYNFLWDAV SSGWSPVDFT  60
STSPIQTTTT AVKPEPMDEL GLTTPVHPQE AASTLSFLQT SILENTSGAF RLATTSNKKV  120
HKGTHYRGVR QRPWGKFAAE IRDPAKNGAR VWLGTYETAE EAALAYDRAA FRMRGSRAML  180
NFPHRIGFNE PEPVRITAKR RDSESEMPVS SKRRKGPAAN QAELGRDRGY GVGHQIVVMA  240
AGEQLLVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-37122190270ATERF1
3gcc_A1e-37122190270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198214KRRDSESEMPVSSKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G131100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615191.10.0ethylene-responsive transcription factor 2-like
SwissprotQ9LW502e-84ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A2C9VQF10.0A0A2C9VQF1_MANES; Uncharacterized protein
STRINGcassava4.1_028940m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-49ethylene responsive element binding factor 1