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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G127000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27672.4 Da PI: 9.4787 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.9e-19 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+W+AeIrdp+ + +r++lg+f+ ae Aa a+++a+++++g Manes.06G127000.1.p 54 HYRGVRHRP-WGKWAAEIRDPK----KaARVWLGTFDNAEAAALAYDEAALRFKG 103 7*****888.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-32 | 53 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-35 | 54 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.20E-18 | 54 | 112 | No hit | No description |
PROSITE profile | PS51032 | 24.434 | 54 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 54 | 112 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-12 | 54 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-13 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-13 | 93 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MNAMVSALVQ VIGNSHNNPL QVHENPLSIP QSNTQGHDQP QQPVPDQGNT RRRHYRGVRH 60 RPWGKWAAEI RDPKKAARVW LGTFDNAEAA ALAYDEAALR FKGSKAKLNF PERVQGRSEL 120 GFLTNRQDLH AGTQQIMTRR VTDPPCPPHT QQEAYTTRFQ YPQFLLPSGN YGFNYAEPVG 180 RYSSGESYLS PASSAASSSS SSSSSSSSTT SHQQEELIRF SMQFGNPYSH YNPPTNWMDF 240 DSTRGRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-25 | 53 | 114 | 4 | 66 | ATERF1 |
3gcc_A | 4e-25 | 53 | 114 | 4 | 66 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G127000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615111.1 | 0.0 | ethylene-responsive transcription factor ERF115-like | ||||
Swissprot | Q9FH54 | 1e-46 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A2C9VQ98 | 0.0 | A0A2C9VQ98_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021388m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 2e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G127000.1.p |
Publications ? help Back to Top | |||
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