PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G125100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 350aa MW: 38761.5 Da PI: 7.9399

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G125100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.2e-09	175	222	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Manes.06G125100.1.p 175 SHSLAERVRREKISERMKILQQLVPGC----DKVTGKALMLDEIINYVQSLQ 222 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.97E-17	169	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.93E-10	169	226	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-16	171	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.77	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-7	175	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-10	177	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MAAFSNQNHH FHLDSPFLPN TPINLPGFME GNISTNCFSQ FYPPELPLQT PLDVRLQDTN 60 PLDHSSVLGL SDNEPSVTKK QSTDNSTVVD KLESGEQVIQ KLPPADKKRK HANGSSSNSA 120 QSKDARDGRR KKQKKCNISE MKDEGKRPKA VKKVSEEPST GYIHVRARRG QATDSHSLAE 180 RVRREKISER MKILQQLVPG CDKVTGKALM LDEIINYVQS LQNQVEFLSM KLASFNPLLH 240 DFGLNLDALM VRPLEGLSSL SSSPSRMQQC NTTRPTDFVD AATATTATST FATANNYPLI 300 DNSSAALLQE QSPSDFIHQD SGSLLWDVDE QRQKFLNPSG FSNKLCSFQ*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MAAFSNQNHH FHLDSPFLPN TPINLPGFME GNISTNCFSQ FYPPELPLQT PLDVRLQDTN  60
PLDHSSVLGL SDNEPSVTKK QSTDNSTVVD KLESGEQVIQ KLPPADKKRK HANGSSSNSA  120
QSKDARDGRR KKQKKCNISE MKDEGKRPKA VKKVSEEPST GYIHVRARRG QATDSHSLAE  180
RVRREKISER MKILQQLVPG CDKVTGKALM LDEIINYVQS LQNQVEFLSM KLASFNPLLH  240
DFGLNLDALM VRPLEGLSSL SSSPSRMQQC NTTRPTDFVD AATATTATST FATANNYPLI  300
DNSSAALLQE QSPSDFIHQD SGSLLWDVDE QRQKFLNPSG FSNKLCSFQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G125100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ391826	5e-76	FQ391826.1 Vitis vinifera clone SS0AFA9YF22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021615112.1	0.0	transcription factor bHLH137-like
TrEMBL	A0A2C9VQ78	0.0	A0A2C9VQ78_MANES; Uncharacterized protein
STRING	cassava4.1_023048m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4182	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	8e-58	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.06G125100.1.p