PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G081800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27915.7 Da    PI: 9.5464
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G081800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.8e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Manes.06G081800.1.p  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                         79***********************************************96 PP
2K-box106.14.1e-35761751100
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          y++++ +++++++++s++ e++kLk++ie Lqr+qRh++GedL++Ls+keLq++e+q++++lk+iR+kKn+l++e+i+elqkk k+lqe+
  Manes.06G081800.1.p  76 YAERQLVETATETNASWTLEHEKLKARIEVLQRNQRHFMGEDLDNLSFKELQSVEHQIDSALKHIRTKKNQLMYESISELQKKDKALQEQ 165
                          567788888899999*************************************************************************** PP

                K-box  91 nkaLrkklee 100
                          n++L kk++e
  Manes.06G081800.1.p 166 NNQLAKKVKE 175
                          *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.52161IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-33289IPR002100Transcription factor, MADS-box
CDDcd002651.57E-41280No hitNo description
PRINTSPR004041.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2888173IPR002487Transcription factor, K-box
PROSITE profilePS5129716.74689179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SCSMERILER YERYSYAERQ LVETATETNA SWTLEHEKLK ARIEVLQRNQ RHFMGEDLDN  120
LSFKELQSVE HQIDSALKHI RTKKNQLMYE SISELQKKDK ALQEQNNQLA KKVKEKEKEI  180
AQQTQKEQQS HTSVDSSTIQ PPPMQPLNLR GNRGEDETTP MQHRSNTLLP AWLLPHMNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-22175173Myocyte-specific enhancer factor 2B
1tqe_Q2e-22175173Myocyte-specific enhancer factor 2B
1tqe_R2e-22175173Myocyte-specific enhancer factor 2B
1tqe_S2e-22175173Myocyte-specific enhancer factor 2B
6byy_A2e-22175173MEF2 CHIMERA
6byy_B2e-22175173MEF2 CHIMERA
6byy_C2e-22175173MEF2 CHIMERA
6byy_D2e-22175173MEF2 CHIMERA
6c9l_A2e-22175173Myocyte-specific enhancer factor 2B
6c9l_B2e-22175173Myocyte-specific enhancer factor 2B
6c9l_C2e-22175173Myocyte-specific enhancer factor 2B
6c9l_D2e-22175173Myocyte-specific enhancer factor 2B
6c9l_E2e-22175173Myocyte-specific enhancer factor 2B
6c9l_F2e-22175173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G081800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1429150.0GU142915.1 Hevea brasiliensis MADS-box transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615011.11e-178truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ424291e-114AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2C9VNY61e-177A0A2C9VNY6_MANES; Uncharacterized protein
STRINGcassava4.1_015321m1e-142(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-99AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]