PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G080300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 532aa    MW: 58460.7 Da    PI: 7.7995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G080300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.52.1e-17263312255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lrel+P+     ++K +Ka+ L +++eYI+ Lq
  Manes.06G080300.1.p 263 RSKHSATEQRRRSKINDRFQMLRELIPHV----DQKRDKASFLLEVIEYIQFLQ 312
                          889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.8E-25258332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-19260330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.907261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-15263316No hitNo description
PfamPF000108.3E-15263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MELPQQQRLF EAEGRKPTHD FLSLYGHSAG QQDPRPPSQG DLKTHDFLQP LERVGKITAK  60
EETTREISSL ERAPPHAPPP SVEHILPGGI GTYSISHISN YFYQRIPKPE DSTVFTVPQA  120
SSTDKNEEHS NCSSYTGSGF TLQEESASKK GKLEKENDGE RSDYAREAAA IRGHWTSSER  180
PSRSSTNTNH NSFCSISSTE PSRQKGQSFI DIIKSGKGSN QDDNSDDEEE FDPKKESSSP  240
IHKGELRVKV DAKHTDQKAN TPRSKHSATE QRRRSKINDR FQMLRELIPH VDQKRDKASF  300
LLEVIEYIQF LQEKVQKYEG SYQGWKNEPA KLLPWGNGIR PIESYVDQSR GTSSGAGPAV  360
LVAAKLGEEN ITVSPTILPN FFNSGASGRN GGAMAQIPPR LVSDAENKAN QPKTQSLHIR  420
SCTGEEVVAG DKLKEQELSI EGGTINISSV YSQGLLNTLT QALQSSGVDL SQASVSVQIE  480
LGKQANRRPI LPESIVKDVE VPSSNQGTIR RRVSSGEGSH QAPKKLKASK S*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G080300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616704.10.0transcription factor BIM1 isoform X4
SwissprotQ9LEZ31e-115BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A2C9VNW60.0A0A2C9VNW6_MANES; Uncharacterized protein
STRINGcassava4.1_005340m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-116bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]