PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 328aa MW: 36616.3 Da PI: 6.0585

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G079000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.1	4.8e-16	55	104	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Manes.06G079000.1.p 55 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 104 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.18E-18	51	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-23	51	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.044	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.55E-14	55	108	No hit	No description
Pfam	PF00010	2.2E-13	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-12	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MRGKGNQNQD EEEYEEEDYN SRKEGPCSNV TINNSNRNNN TNKDGKNIDK ANAIRSKHSV 60 TEQRRRSKIN ERFQILRDLI PHSDQKRDTA SFLLEVIEYV QYLQEKVQKY EGSYQGWSSE 120 PTKLMPWRNS HWRVQSFISH PQAIKNGSAP GPTFPGKFDE NNIAVTPTLL VGTQSQVEPE 180 PSRDVACKAV ERQATIPIHV QSDDLVAHPL QQHVSDAQLA EFPVTNETMD QQEELTIEGG 240 TISISSVYSQ GLLNNLTQAL QSAGVDLSQA NISVQIDLGK SANRGPTSRT SAAKDPQNHP 300 SSDQLMTHLR DVGRGEDSDQ AQKRLKT*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G079000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614628.1	0.0	transcription factor BIM2-like isoform X2
Swissprot	Q9CAA4	1e-116	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A2C9VNS9	0.0	A0A2C9VNS9_MANES; Uncharacterized protein
STRING	cassava4.1_011743m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-102	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Manes.06G079000.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]