PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G078400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 564aa    MW: 60750.1 Da    PI: 5.9966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G078400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09379427355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Manes.06G078400.1.p 379 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 427
                          58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-17374445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-11374431No hitNo description
PROSITE profilePS5088815.485376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16377444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6379427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MEMCDKDKLE LDKRNDNHVD YHLPAGVPSD WRFSSASIAN SSLGLVSTDN QMPVCRGDLV  60
GTSCSSAPMV DSFSPGLWDH TTNSQNLGFC DIGVQNSAST SNPIGIRKGC PPSLRSCIDK  120
APDIGWNPPS SMLKDGIFFP TAPGVLPESL SQFPADSTFI ERAARFSCFN GGNFSDMVNP  180
YGIPEPMDLY SRGGGMMQGP QEFFAGTGLK SVSGGQGHKN VMNMGDTSKA TSLSVEPVAT  240
EGSPLKNGRK IGSLVRSHDE GKLGAGGSGN ESEEADFSGG GCQKEQCMLE GNGGELSAKS  300
LGSKKRKRNG QDTDLDHGKG AQQSVEAAKD NPEVQQMDKS PTSTPNKTTG KQGKQGSQAS  360
DSPKEEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII  420
NYVQSLQRQV EFLSMKLATV NPRLDFNIEG MITKDILHSR VVPSSNLEFS PEVPMVYPPF  480
NASQPGLIQA SFPGMENHSD VLRRAISSQL TPMTGVFKEP TQLPNVWDYE LHNVVQMGYA  540
TSAPQDSQDM NGSLPQGQMK AEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G078400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616171.10.0transcription factor bHLH49-like
RefseqXP_021616172.10.0transcription factor bHLH49-like
TrEMBLA0A2C9VNU30.0A0A2C9VNU3_MANES; Uncharacterized protein
STRINGcassava4.1_004676m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-123bHLH family protein