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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G071700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | RAV | ||||||||
Protein Properties | Length: 370aa MW: 41012.2 Da PI: 9.377 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 5.8e-14 | 67 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g Manes.06G071700.1.p 67 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 115 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 100.9 | 7.5e-32 | 200 | 300 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae++ +++++++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ Manes.06G071700.1.p 200 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqnVSNSTKGVLLNFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRS 289 89***************************996677899**************************************************87 PP SSSEE..EEEE CS B3 86 grsefelvvkv 96 +++l++ + Manes.06G071700.1.p 290 TGPDKQLYIDW 300 66777677665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.9E-9 | 67 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-17 | 67 | 123 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.16E-25 | 67 | 125 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.2E-20 | 68 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-28 | 68 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.073 | 68 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-42 | 194 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-32 | 198 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-28 | 199 | 289 | No hit | No description |
PROSITE profile | PS50863 | 14.198 | 200 | 304 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-24 | 200 | 304 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-28 | 200 | 300 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDGSCIDEST ATSDSISVSI SPTSAVSHFP PPTKSPESPL CRVGSGSSVI LDSEFGVEAE 60 SRKLPSSKYK GVVPQPNGRW GAQIYEKHQR VWLGTFNEED EAAKAYDIAA QRFRGRDAIT 120 NFKPQGEENE DDDIETAFLN SRSKAEIVDM LRKHTYKDEL EQSKRNYLID GQGKQHRNPG 180 ANNAALSGSG RVLKEREQLF EKAVTPSDVG KLNRLVIPKQ HAEKYFPLQN VSNSTKGVLL 240 NFEDITGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLKA GDIVSFQRST GPDKQLYIDW 300 KVKTGPNPVV CSVKPVQMVR LFGVNIFKLA ENNSGGAEGA GGCNGKRSIR EVELSSLECI 360 KKQRIIGAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-58 | 197 | 307 | 11 | 121 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G071700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617162.1 | 0.0 | AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q9C6M5 | 1e-154 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A2C9VR17 | 0.0 | A0A2C9VR17_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010068m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-146 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G071700.1.p |