PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G068600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 456aa    MW: 51306.4 Da    PI: 6.4608
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G068600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.6e-091659340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  Manes.06G068600.1.p 16 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplasrHERV 59
                         578*****************************668888888876 PP
2CCT67.92.7e-23400443144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Manes.06G068600.1.p 400 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 443
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8931461IPR000315B-box-type zinc finger
SMARTSM003369.4E-111461IPR000315B-box-type zinc finger
PfamPF006438.7E-81659IPR000315B-box-type zinc finger
CDDcd000216.56E-91761No hitNo description
PROSITE profilePS5101716.083400442IPR010402CCT domain
PfamPF062037.8E-18400442IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MISYKNVANA VGGKTARACD SCIRKRARWY CAADDAFLCQ SCDSSVHSAN PLASRHERVR  60
LKTASLKSLD LVSKEKCVPS WHRGFTRKAR TPRHGKPVSH SKIVEKLRNP VPLVPEVGSD  120
EISHEETEEE QLLYRVPTFD PYVAQLCSSA TISNNEAETT TAGGNYSDQT VAEAHGIESK  180
ASLDAGGQDV LHGFLPSDMD LAQFAEDVES LLGRGLENES FGMEGLGLMS CKEEKELQRE  240
YYPAREKVKL EDEQQIAAQK EEKIVRECHV DTDEIEMARE PPFELSFDDD SGTCGEEDEK  300
VRIRQNDSKN NEEYEDDDEN LTKKKKKRKI LLSLDYEAVI TAWASQRSPW TTGNRPDVDP  360
DECWPEYCMG ICGGELHHHG YGDHPSGVGL QHPAMGDGGR EARVSRYREK RRTRLFSKKI  420
RYEVRKLNAE KRPRMKGRFV KRASFAAPAF PLHAK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328KKKKKRK
2323328KKKKRK
3410426RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G068600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2293654e-46CU229365.1 Populus EST from mild drought-stressed leaves.
GenBankCU2310144e-46CU231014.1 Populus EST from mild drought-stressed leaves.
GenBankCU2315594e-46CU231559.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616374.10.0zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA0A2C9VNJ70.0A0A2C9VNJ7_MANES; Uncharacterized protein
STRINGPOPTR_0008s11930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-103B-box type zinc finger protein with CCT domain