PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G055000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 848aa    MW: 93278.5 Da    PI: 6.3136
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G055000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-181977357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Manes.06G055000.1.p 19 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                         6789*****************************************************97 PP
2START171.45.9e-541683752204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l  i +g  g
  Manes.06G055000.1.p 168 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIIAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDILSIIPTGngG 256
                          68999*****************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v+hvdl+++
  Manes.06G055000.1.p 257 TIELIYMQTYAPTTLAAaRDFWTLRYTTTLEDGSLVICERSLTAITGGPTgppALSFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAW 346
                          *******************************************99888888889************************************ PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          +++++lr+l++s+ + ++k+++a+l++ +
  Manes.06G055000.1.p 347 SVPEVLRPLYESSKILAQKMTMAALRYIR 375
                          *************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-18477IPR009057Homeodomain-like
PROSITE profilePS5007115.6611478IPR001356Homeobox domain
SMARTSM003896.3E-151682IPR001356Homeobox domain
CDDcd000864.07E-161979No hitNo description
PfamPF000466.4E-161977IPR001356Homeobox domain
SuperFamilySSF466896.84E-161980IPR009057Homeodomain-like
CDDcd146863.70E-671110No hitNo description
PROSITE profilePS5084826.147158386IPR002913START domain
CDDcd088753.44E-73162378No hitNo description
Gene3DG3DSA:3.30.530.201.5E-21166372IPR023393START-like domain
SMARTSM002341.5E-51167377IPR002913START domain
PfamPF018521.6E-51168375IPR002913START domain
SuperFamilySSF559615.77E-38168379No hitNo description
PfamPF086702.8E-49702846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MAFSMHNKEG NNKQMDTSKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE SSRLQTVNRK LTAMNKLLME ENDRLQKQVS QLVYDNGYMR  120
QQLQNASATT TDNSCESVVM SGQQQQQHNP TPQHPQRDAN NPAGLLAIAE ETLAEFLSKA  180
TGTAVDWVQM IGMKPGPDSI GIIAVSRNCS GVAARACGLV SLEPTKVAEI LKDRPSWFRD  240
CRCLDILSII PTGNGGTIEL IYMQTYAPTT LAAARDFWTL RYTTTLEDGS LVICERSLTA  300
ITGGPTGPPA LSFVRAEMLP SGYLIRPCEG GGSIIHIVDH VDLDAWSVPE VLRPLYESSK  360
ILAQKMTMAA LRYIRQIAQE TSGEIQYGGG RQPAVLRTFS QRLCRGFNDA VNGFADDGWS  420
LLGGDGMEDV TIAINSSPNK FLGTQYNASI FPTFGGGVLC AKASMLLQNV PPAVLVRFLR  480
EHRSEWADYG VDTYSAHCLK ASPYAIPCAR PGGFPSSQVI LPLAHTVEHE EFLEVVRLEG  540
HAFSPEDVAL AQDMYLLQLC SGVDETAIGA CAQLVFAPID ESFADDAPLL PSGFRVIPLD  600
PKADGPAATR TLDLASTLEV GAGGARPSSE ADTSSYNLRS VLTIAFQFTF ENHLRDNVAA  660
MARQYVRSVV GSVQRVAMAI SPSRLSSHIA PKTLPGSPEA LTLARWVYRS YRIHTGGDLF  720
RVDSQVGDAL LKQIWHHSDA IMCCSLKTNA SPVFTFANQA GLDMLETTLV ALQDIMLEKI  780
LEEAGRKLLY SEFSKIMQQG FAYLPAGICV SSMGRPVSYE QAIAWKVLND DDSNHCLAFM  840
FVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G055000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616343.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2C9VN670.0A0A2C9VN67_MANES; Uncharacterized protein
STRINGcassava4.1_001619m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]