PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G054900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YA

Protein Properties

Length: 213aa MW: 23342.7 Da PI: 7.7764

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G054900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.7	6.9e-32	117	173	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +ksrkpylheSRh hAlrR+Rg gGrF Manes.06G054900.1.p 117 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKPYLHESRHLHALRRARGLGGRF 173 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-35	115	176	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.376	116	176	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.8E-27	118	173	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.5E-23	119	141	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	121	141	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.5E-23	150	173	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MTSSVHDLSD CCPDNSETSE QQKHSEPQVH SSSPATASMH PGMSNPNAQY ATNLQLGSGH 60 AMAAAAYPYP DPYYRSIFAP YDAQPYPPQP YGGQPMVHLQ LMGIQQAGVP LPSDAVEEPV 120 FVNAKQYHGI LRRRQSRAKA ESENKAIKSR KPYLHESRHL HALRRARGLG GRFLNSKKDE 180 NQQENDSVGD KSQSNINLNS DKNDIASSDS KS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	116	186	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G054900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021616929.1	1e-157	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_021616930.1	1e-157	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	6e-70	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2C9VPI1	1e-155	A0A2C9VPI1_MANES; Uncharacterized protein
STRING	cassava4.1_016099m	1e-156	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-42	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Manes.06G054900.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]