PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G052000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 245aa    MW: 27784.6 Da    PI: 4.6029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G052000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.7e-07144188655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +++ r RR++i +  +eL +l+P  +      K++ ae+L+ A +Y+k +q
  Manes.06G052000.1.p 144 SIAARERRRKITEMTQELGKLVPGgN------KMNTAEMLQAASKYVKFMQ 188
                          67889******************955......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.17138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-12141201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-8141192No hitNo description
Gene3DG3DSA:4.10.280.102.0E-11142212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5144188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-10144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLSISPHSDV ETDHDHQLLA HNDNLITFSD FSINPLFEFD DDLFYYDSYT NLLPYFSSSP  60
IDNVMSLSHD TSLLQEFEYC HYPKRRKSYA DACHSSFSPI FFDGFIANSD LVIPDFPALL  120
LMEEEVAAIA LGKNQAEGAL SAQSIAARER RRKITEMTQE LGKLVPGGNK MNTAEMLQAA  180
SKYVKFMQAQ VKLLQLMEPM HQELNLHMQE LQILLASPTV QEKLYSQEKC LVPRELLQTI  240
ANNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G052000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640367.11e-121transcription factor bHLH52-like
TrEMBLA0A2C9VPE21e-180A0A2C9VPE2_MANES; Uncharacterized protein
STRINGcassava4.1_030927m1e-170(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.19e-34bHLH family protein