PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G041200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TALE
Protein Properties Length: 341aa    MW: 37791.3 Da    PI: 5.4424
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G041200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.4e-072913232254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  Manes.06G041200.1.p 291 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 323
                          59*****************************87 PP
2ELK29.51.7e-10244265122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y++++ ++++E++
  Manes.06G041200.1.p 244 ELKHELKQGYKEKIADVREEIL 265
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.0E-1879123IPR005540KNOX1
PfamPF037901.5E-1781122IPR005540KNOX1
SMARTSM012566.3E-26132187IPR005541KNOX2
PfamPF037914.7E-18136186IPR005541KNOX2
SMARTSM011880.0018244265IPR005539ELK domain
PfamPF037898.2E-6244265IPR005539ELK domain
PROSITE profilePS512139.969244264IPR005539ELK domain
PROSITE profilePS5007111.677264327IPR001356Homeobox domain
SMARTSM003897.0E-11266331IPR001356Homeobox domain
SuperFamilySSF466895.13E-16266328IPR009057Homeodomain-like
CDDcd000864.39E-11267328No hitNo description
Gene3DG3DSA:1.10.10.603.8E-25271327IPR009057Homeodomain-like
PfamPF059208.8E-18284323IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASQDHVSHE MAFQSSLAVS ASSAASAGPS WLSNAALRLN DDVLIQNRSE KGDRNDNKNS  60
GEDELIDGGG IGGDNWERAK CKAEILGHPL YEQLLAAHVA CLRIATPVDQ LARIDAQLAQ  120
SQEVVAKYSL LGNGQVVDEK ELDQFMTQYV LLLCTFKDQL QQHVRVHAME AVMACWDLEQ  180
SLQSLTGASL GEGSGATMSD DDDDLADSDT NLYDGSLDGP DCMGFGPLVL TESEKSLMEH  240
VRKELKHELK QGYKEKIADV REEILRKRRA GKLPGDTTSL LKAWWQSHSK WPYPTEEDKA  300
RLVQETGLQL KQINNWFINQ RKRNWHSSPS GSTTKSKRKK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320339RKRNWHSSPSGSTTKSKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G041200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615644.10.0homeobox protein knotted-1-like 3
SwissprotP480001e-159KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A251KLK40.0A0A251KLK4_MANES; Uncharacterized protein
STRINGcassava4.1_011212m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-152KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]