PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G036900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family RAV
Protein Properties Length: 358aa    MW: 40851.5 Da    PI: 6.6529
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G036900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.91.6e-104592154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++++GV  +  +g W ++I+       ++r++lg+f +++eAa a++ a++kl+
  Manes.06G036900.1.p 45 TKFRGVVAHQ-NGHWGSQIYFD-----HQRIWLGTFKSEKEAAMAYDSAALKLR 92
                         69****9888.8*******993.....4**********99************98 PP
2B385.16.3e-27168261186
                          EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                          f+k+ltpsdv+k++rlv+pkkfa+++          +     +++l ++d+  + W+++++y+++s++yv+t+GW++Fvk+++Lk++D++
  Manes.06G036900.1.p 168 FQKELTPSDVGKLNRLVIPKKFATKFfpsmsevdqeN--GVDDRQLAFYDKAMKLWKFRYCYWRSSQSYVFTRGWNGFVKEKKLKANDTI 255
                          99**************************999988543..346778********************************************* PP

                          EEEE-S CS
                   B3  81 vFkldg 86 
                           F+l +
  Manes.06G036900.1.p 256 CFSLCE 261
                          ***863 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.58E-2245101No hitNo description
PfamPF008471.4E-54692IPR001471AP2/ERF domain
PROSITE profilePS5103216.67446101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-1746101IPR001471AP2/ERF domain
SMARTSM003805.7E-2046107IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1546102IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.103.6E-32163280IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-24167269No hitNo description
SuperFamilySSF1019364.97E-27167264IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-22168268IPR003340B3 DNA binding domain
PfamPF023624.2E-24168261IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07168276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGKDIVSMIS SGETAVIEEV SDSNSTTYPS LMSREARLDK SICTTKFRGV VAHQNGHWGS  60
QIYFDHQRIW LGTFKSEKEA AMAYDSAALK LRSGDCRRNF PFTNVTVEEP KFQNLYSTEA  120
VLNMIKDGTY QHKFADFLMT CTQNSNADLS PKLMKTQSKR ILTCKQLFQK ELTPSDVGKL  180
NRLVIPKKFA TKFFPSMSEV DQENGVDDRQ LAFYDKAMKL WKFRYCYWRS SQSYVFTRGW  240
NGFVKEKKLK ANDTICFSLC ECRENSKVTQ TYCMIDVKNG EERSSLLGLG SQWVDMGVEL  300
QLQLHLGQSC GQDCIEKMEE EEEEEEEVVE RGGLVMAEPR SECADTKGFR LFGARII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2816428210121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G036900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616106.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X3
SwissprotQ9C6883e-99RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2C9VMK60.0A0A2C9VMK6_MANES; Uncharacterized protein
STRINGcassava4.1_030248m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-101RAV family protein