PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G018700.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 213aa MW: 24030.5 Da PI: 5.0135 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.1e-13 | 51 | 92 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + +++Ka+i + A++YI++L Manes.06G018700.4.p 51 SERNRRKKLNDRLFALRAVVPNiS------RMDKASIIKDAIDYIQEL 92 6*********************66......9***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.815 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-17 | 46 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.13E-13 | 47 | 97 | No hit | No description |
SMART | SM00353 | 6.1E-15 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-16 | 50 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 51 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00883 | 165 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDSIQYIEGE VATYELSSLI FSSWAIDEIS GYESSSLDGA ASSVTYKNVV SERNRRKKLN 60 DRLFALRAVV PNISRMDKAS IIKDAIDYIQ ELHEQEKIIQ AEIRELESGN LKKGPGYEFE 120 EDLPVFLGSK KKKIDQFYYS CGSRAYPIED LELSVAYMGD KILRVSLTCS KRTDTMVKLC 180 EAFESLQLNI ISADITTVSG RLLMTVFIKT KY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-14 | 48 | 110 | 9 | 69 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 48 | 110 | 9 | 69 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 48 | 110 | 9 | 69 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 48 | 110 | 9 | 69 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 48 | 110 | 9 | 69 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 48 | 110 | 9 | 69 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 48 | 110 | 9 | 69 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 48 | 110 | 9 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G018700.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615071.1 | 1e-151 | transcription factor bHLH35-like isoform X1 | ||||
Swissprot | Q2HIV9 | 1e-61 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A2C9VNL5 | 1e-153 | A0A2C9VNL5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015642m | 1e-136 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 1e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G018700.4.p |