PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G018700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 225aa    MW: 25384.1 Da    PI: 4.9221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G018700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-133778854
                         HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          Er+RR+++N++++ Lr ++P+ +      +++Ka+i + A++YI++L
  Manes.06G018700.2.p 37 SERNRRKKLNDRLFALRAVVPNiS------RMDKASIIKDAIDYIQEL 78
                         6*********************66......9***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8152978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-173094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.70E-133383No hitNo description
SMARTSM003536.1E-153584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-163693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-103778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.9E-7146213No hitNo description
Gene3DG3DSA:3.30.70.2601.6E-4149210No hitNo description
PROSITE profilePS516719.545150223IPR002912ACT domain
CDDcd048734.62E-4151212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDSIQYIDSW AIDEISGYES SSLDGAASSV TYKNVVSERN RRKKLNDRLF ALRAVVPNIS  60
RMDKASIIKD AIDYIQELHE QEKIIQAEIR ELESGNLKKG PGYEFEEDLP VFLGSKKKKI  120
DQFYYSCGSR AYPIEDLELS VAYMGDKILR VSLTCSKRTD TMVKLCEAFE SLQLNIISAD  180
ITTVSGRLLM TVFIKANEEE SDYLKKKIET AIGALHDPQS LMIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-143496969Transcription factor MYC2
5gnj_B4e-143496969Transcription factor MYC2
5gnj_E4e-143496969Transcription factor MYC2
5gnj_F4e-143496969Transcription factor MYC2
5gnj_G4e-143496969Transcription factor MYC2
5gnj_I4e-143496969Transcription factor MYC2
5gnj_M4e-143496969Transcription factor MYC2
5gnj_N4e-143496969Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G018700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615072.11e-164transcription factor bHLH35-like isoform X2
SwissprotQ2HIV94e-72BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2C9VPJ31e-163A0A2C9VPJ3_MANES; Uncharacterized protein
STRINGcassava4.1_015642m1e-163(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-75bHLH family protein