PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G015000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 401aa    MW: 45554.9 Da    PI: 7.7249
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G015000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.4e-50351602128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ 
  Manes.06G015000.1.p  35 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 123
                          79***************************.89***************8778899************************************ PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Manes.06G015000.1.p 124 IKTENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 160
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5533184IPR003441NAC domain
PROSITE profilePS5100555.33634185IPR003441NAC domain
PfamPF023653.5E-2536160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAIAATMSLN PNDNSITSAT TTTTTKDDHE QDMVMPGFRF HPTEEELVEF YLRRKVEGKR  60
FNVELITFLD LYRYDPWELP ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA  120
DRMIKTENSR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PHHETERYQK VNNSAEISLC  180
RVYKRAGVED HPSLPRSLPS RASSSRGAQS EKKNPQQLSM ERFQPFGGVQ SQQIEMEKMS  240
ETDGSSSSDV TTALGLSKST NNNNAYNPVP TINTSLGLPA AIEEEEIFLN QSRQACSLVP  300
NNTHLFAGSA SASSNPVDDL HRLINYQQAC ISHHQQQQYY NLHHQQQQQP SQFSIMAPQT  360
QPLALNVLPN SLPAAFSERL WEWNPMPEAN REYNVNNPFK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-553618519165NO APICAL MERISTEM PROTEIN
1ut4_B1e-553618519165NO APICAL MERISTEM PROTEIN
1ut7_A1e-553618519165NO APICAL MERISTEM PROTEIN
1ut7_B1e-553618519165NO APICAL MERISTEM PROTEIN
3swm_A1e-553618522168NAC domain-containing protein 19
3swm_B1e-553618522168NAC domain-containing protein 19
3swm_C1e-553618522168NAC domain-containing protein 19
3swm_D1e-553618522168NAC domain-containing protein 19
3swp_A1e-553618522168NAC domain-containing protein 19
3swp_B1e-553618522168NAC domain-containing protein 19
3swp_C1e-553618522168NAC domain-containing protein 19
3swp_D1e-553618522168NAC domain-containing protein 19
4dul_A1e-553618519165NAC domain-containing protein 19
4dul_B1e-553618519165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G015000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051480.0KR605148.1 Manihot esculenta NAC transcription factors 10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615084.10.0NAC domain-containing protein 35 isoform X1
SwissprotQ9ZVP81e-121NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A2C9VPE60.0A0A2C9VPE6_MANES; Uncharacterized protein
STRINGcassava4.1_009166m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-107NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]