PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 224aa MW: 25809.2 Da PI: 7.4514

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G000300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.1e-18	102	156	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ + +++ ++ eLA++l+Lt rqV vWFqNrRa+ k Manes.06G000300.1.p 102 RKKLKLTKEQSTLLEDSFKLHTTLNPIQKLELAEQLNLTARQVEVWFQNRRARIK 156 788899***********************************************87 PP
2	HD-ZIP_I/II	116.9	1.2e-37	102	190	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk++l+keq++lLE+sF+ +++L+p +K ela++L+l++rqv+vWFqnrRAR+k+kq+E+d+e+Lkr++++l++en+rL+ke ++Lr+ Manes.06G000300.1.p 102 RKKLKLTKEQSTLLEDSFKLHTTLNPIQKLELAEQLNLTARQVEVWFQNRRARIKLKQTEVDCEFLKRCCESLRDENTRLKKELQQLRS 190 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-17	80	156	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-18	92	159	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.378	98	158	IPR001356	Homeobox domain
SMART	SM00389	1.7E-16	100	162	IPR001356	Homeobox domain
CDD	cd00086	1.79E-14	102	159	No hit	No description
Pfam	PF00046	3.2E-15	102	156	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	133	156	IPR017970	Homeobox, conserved site
SMART	SM00340	2.2E-16	158	203	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.6E-9	158	191	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MEDHEDEYCN TGLGLKLGMT HYVPKGPKRR NNDKSRVCLD LSFTLCPKEQ EGKGKDEDEE 60 EEEEKSISIR GSSFKSVHHQ DDEEHANDKG NDFISINKNS SRKKLKLTKE QSTLLEDSFK 120 LHTTLNPIQK LELAEQLNLT ARQVEVWFQN RRARIKLKQT EVDCEFLKRC CESLRDENTR 180 LKKELQQLRS LELTRGSPLC LHLPMCPSCE KAAAFGRGPH RQQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	29	PKGPKRR
2	150	158	RRARIKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G000300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614771.1	1e-149	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-47	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2C9VLF1	1e-162	A0A2C9VLF1_MANES; Uncharacterized protein
STRING	cassava4.1_029821m	4e-83	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5664	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-50	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.06G000300.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]