PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.05G208100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

M-type_MADS

Protein Properties

Length: 215aa MW: 24192.9 Da PI: 9.9925

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G208100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.4	1e-14	21	69	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ +tfskRr gi KKA+EL +L++++ a +fs+ gk + + Manes.05G208100.1.p 21 KKIENQDVMFITFSKRRSGIYKKASELITLTGVKLAFTVFSPAGKPFSF 69 689*****************************************97776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.647	13	73	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.7E-20	13	72	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-21	14	88	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-14	15	35	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.9E-18	22	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-14	35	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-14	50	71	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MATTTEIQEK KTKGRQRIEM KKIENQDVMF ITFSKRRSGI YKKASELITL TGVKLAFTVF 60 SPAGKPFSFA HPSVDAIANR FLSKQPQANT QSSTHPLVEA HCQVKIEELN RQNHELLCQL 120 DSLKKKGKQL KQRMTGKEIK GWWDTPIEEM NVEQMLEVEA ACKEIQTKLI NKLKFKTDGG 180 ASSSPAYHQA QMLNPFSPVG VNNTNLPVFP PDFD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	LKKKGKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G208100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612996.1	1e-159	agamous-like MADS-box protein AGL62
TrEMBL	A0A2C9VYD0	1e-158	A0A2C9VYD0_MANES; Uncharacterized protein
STRING	cassava4.1_025465m	1e-159	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-38	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Manes.05G208100.1.p