PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G198200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 563aa    MW: 61808.2 Da    PI: 7.1084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G198200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.4e-09369416455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Manes.05G198200.1.p 369 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 416
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17363434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.23E-11363420No hitNo description
PROSITE profilePS5088815.663365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-17365433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6369416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10371421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEKGKHFLSK GANNSAAAEV PIWNSCSFGM EMQSNKLNCF SDQLPNCFFN PNWDSSMDQS  60
DPFESALSSI VSSPVTTSNA IPSSCGVGDP VMIREVIGRL GNICNSGEIS YINNNPSTNT  120
SCYGTPLSSP PKLNNPTMDS KIAGNLPILG KGIPEHPSLA SFPADPGFVE RAARFSCFGN  180
GNLVGLNDKF RLNESELSHR LMPRLEPGRV SSNLSVKALG PQANVNVDGN SNSDKKFSRL  240
SRSSTPENAE FGDSREESSV SEQIPGGELS MKGQKDCYSR KRKAIPRGKA KETLSSSLST  300
SDSKVVGDKD ETNAKRSKSE ETNGKEKDVI KAKEEQNSNQ KQNKDNEKPL EPPKDYIHVR  360
ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE  420
FLSMKLATVN PRMDINMESL LSKEIFQSRG SLSHNLYPME NSAGLSFPYV YQSQQGIALP  480
NGMFSNGETQ FSVNPLNVVL KQNQCRQLPA LNELGDAAWQ VSTFWEDDLQ SVVQMGFGQN  540
QQQQQDFHAG PNMPGGQMKV EL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G198200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2328458e-42CU232845.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614460.10.0transcription factor bHLH62-like isoform X1
TrEMBLA0A2C9W0650.0A0A2C9W065_MANES; Uncharacterized protein
STRINGcassava4.1_004685m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-90bHLH family protein